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Protein Overview: npp-10

General Information:
Name(s) found: npp-10 / CE34447 [WormBase]
Description(s) found:
Found 11 descriptions.
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  • WBGene00003796 locus:npp-10 nucleoporin status:Confirmed UniProt:Q95PX4 protein_id:AAP68917.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 492 amino acids

    Gene Ontology:
    Cellular Component: nuclear pore [IEALink to PubMed article]
    Biological Process: embryonic cleavage [IMP]
    spindle organization [IMP]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    transport [IEALink to PubMed article]
    reproduction [IMPLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQQVAPVPV IGVTADVLQM QANMKSLKSQ LTNAPYGDSP LLKYNANPEI DGKSSPASTQ  60
   61 RQLRFLAAKK GALSSSSDAQ DSSFIIPPIS KVMSDLSPAV TRSADVTKDL NYTSKEAPPS 120
  121 LARGLRNSTF NPNMSLTNRS VHESSALDKT IDSALDASMN GTSNRLGVRG SVRRSNLKQL 180
  181 DMSLLADSSR VGRESRVADP DALPRISESE RRQDVVTSTP AVDPVQAVIQ RHNDRNRDPP 240
  241 SLNLDTTCDE HTGLEPVSAA TSSAASVVST PSEETVNVNS AAGVKLTKPD YFSLPTINEM 300
  301 KNMIKNGRVV LEDGLTVGRS SYGSVYWPGR VELKDVALDE IVVFRHREVT VYPNEEEKAP 360
  361 EGQELNRPAE VTLERVWYTD KKTKKEVRDV VKLSEIGWRE HLERQTIRMG AAFKDFRAET 420
  421 GSWVFRVDHF SKYGLADDDE PMDGSPPQQA LQASSPLQVI DMNTSARDVN NQVQRKKVHK 480
  481 ATDAHHQEVR FE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-1 hcp1 IP from december2004 Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..156] MSA 4.161993 View MSA. No confident structure predictions are available.
    2 View Details [157..265] deduced N/A No confident structure predictions are available.
    3 View Details [266..492] PSI-BLAST 68.0 C-terminal autoproteolytic domain of nucleoporin nup98


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle