| Protein: | npp-10 |
| Organism: | Caenorhabditis elegans |
| Length: | 492 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for npp-10.
| Description | E-value | Query Range |
Subject Range |
|
|
460.0 | [0..1] | [492..1] |
|
Region A: Residues: [1-156] |
1 11 21 31 41 51
| | | | | |
1 MQQQVAPVPV IGVTADVLQM QANMKSLKSQ LTNAPYGDSP LLKYNANPEI DGKSSPASTQ 60
61 RQLRFLAAKK GALSSSSDAQ DSSFIIPPIS KVMSDLSPAV TRSADVTKDL NYTSKEAPPS 120
121 LARGLRNSTF NPNMSLTNRS VHESSALDKT IDSALD
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [157-265] |
1 11 21 31 41 51
| | | | | |
1 ASMNGTSNRL GVRGSVRRSN LKQLDMSLLA DSSRVGRESR VADPDALPRI SESERRQDVV 60
61 TSTPAVDPVQ AVIQRHNDRN RDPPSLNLDT TCDEHTGLEP VSAATSSAA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [266-492] |
1 11 21 31 41 51
| | | | | |
1 SVVSTPSEET VNVNSAAGVK LTKPDYFSLP TINEMKNMIK NGRVVLEDGL TVGRSSYGSV 60
61 YWPGRVELKD VALDEIVVFR HREVTVYPNE EEKAPEGQEL NRPAEVTLER VWYTDKKTKK 120
121 EVRDVVKLSE IGWREHLERQ TIRMGAAFKD FRAETGSWVF RVDHFSKYGL ADDDEPMDGS 180
181 PPQQALQASS PLQVIDMNTS ARDVNNQVQR KKVHKATDAH HQEVRFE
|
| Detection Method: | |
| Confidence: | 68.0 |
| Match: | 1ko6A |
| Description: | C-terminal autoproteolytic domain of nucleoporin nup98 |
Matching Structure (courtesy of the PDB): |
|
