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Protein Overview: CE34275

General Information:
Name(s) found: CE34275 [WormBase]
Description(s) found:
Found 15 descriptions.
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  • WBGene00016796 locus:cec-2 status:Partially_confirmed UniProt:O44139 protein_id:CCD67235.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 557 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    chromatin [IEALink to PubMed article]
    Biological Process: hermaphrodite genitalia development [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    chromatin assembly or disassembly [IEALink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    Molecular Function: chromatin binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQSTSSEGS GPAAKIARKN SPENDPETAE MFIVDEITDM RYSTTCRQLQ FLVKWAIPGS  60
   61 EMTWQPLDDF PFGLNHFSIL DYRKDHEEKY EACLQKQRRS KVMKDDDRSW NVSRNSNRSR 120
  121 NRSKSSSKPA QRTEPMTQRE KFDAILQISE ISLEKQYKLT NKKVPRRSQF TDPDAPKKKS 180
  181 KGARHYRDQN LKTLFKSSLI RKYRKPQESD DDLEPDVAQD SPENTPAPPT KSPESSGFSE 240
  241 NLENLGANTP SPSPDFEEEH LEKKPETGNL TENRPKRVYS HETAESMENY AKLLLYTAFD 300
  301 TKSWETLGGH IKNGFRLSFV CSNGLTIIEN VVELNKNLNK FSDSRESRMV ADLFELLLKK 360
  361 GVEFDEKTLP PTMCAAVRST RYDIRRDFRC LHNQYIDKRP RMCEWFSATG GGGSCGTTEI 420
  421 CTFWNNDAGY LPNTHQRSKF HVDLSEFTGN NLGLLAFSMA WHEDFIDNNS GGPEIVKNNR 480
  481 FNAHIDVPCF TLWMNGKMCE KLENSHGLSI FRPLGTVLDV NELKIKITEH SSRFVAILPV 540
  541 FNLNSDWKNC FFPLENQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..126] FFAS03 1.13 Heterochromatin protein 1, HP1
    2 View Details [127..227] deduced N/A No confident structure predictions are available.
    3 View Details [228..432] deduced N/A No confident structure predictions are available.
    4 View Details [433..557] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.42345198162395 bayes_pls_golite062009
  • protein binding
    		•  0.684961197702121 bayes_pls_golite062009
  • chromatin binding
    		•  0.158932150091551 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0110975855715769 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle