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Protein Overview: ifc-2

General Information:
Name(s) found: ifc-2 / CE34062 [WormBase]
Description(s) found:
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  • WBGene00002056 locus:ifc-2 status:Partially_confirmed UniProt:H2KZR4 protein_id:CCD69441.1 [WormBase]
  • gi|71994267|ref|NP_001024814.1| Intermediate Filament, C family member (ifc-2) [Caenorhabditis elegans] [NCBI NR]
  • gi|30794589|gb|AAP40524.1| Intermediate filament, c protein 2, isoform c, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • [wormpep104.fasta]
  • Intermediate filament, c protein 2, isoform c [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • CE34062 WBGene00002056 locus:ifc-2 status:Partially_confirmed TR:Q7Z2A3 protein_id:AAP40524.1 [wormpep150.fasta]
  • 34062 WBGene00002056 locus:ifc-2 status:Partially_confirmed TR:Q7Z2A3 protein_id:AAP40524.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • locus:ifc-2 status:Partially_confirmed TR:Q7Z2A3 protein_id:AAP40524.1 [wormpep115.fasta.reversed]
  • CE34062 WBGene00002056 locus:ifc-2 status:Partially_confirmed UniProt:Q7Z2A3_CAEEL protein_id:AAP40524.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE34062 WBGene00002056 locus:ifc-2 status:Partially_confirmed UniProt:Q7Z2A3_CAEEL protein_id:AAP40524.1| [wormORF-contam.fasta]
  • Intermediate Filament, C family member (ifc-2) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE34062 WBGene00002056 locus:ifc-2 status:Partially_confirmed UniProt:Q7Z2A3 protein_id:AAP40524.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE34062 WBGene00002056 locus:ifc-2 status:Partially_confirmed UniProt:H2KZR4 protein_id:CCD69441.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • Isoform of Q21067, Intermediate Filament, C OS=Caenorhabditis elegans GN=ifc-2 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 685 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    Biological Process: locomotory behavior [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    collagen and cuticulin-based cuticle development [IMPLink to PubMed article]
    morphogenesis of an epithelium [IMPLink to PubMed articleLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    determination of adult lifespan [IMPLink to PubMed article]
    positive regulation of multicellular organism growth [IMPLink to PubMed articleLink to PubMed article]
    Molecular Function: structural molecule activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLTSTPFST DDERYSGYTN SAMSPPLQKQ LIQEVSLSYS APYTSTVKPS RHDLPLAFSP  60
   61 YSLDSEIEDL HSHTYSQLSN RSNGNKVESA ERIYTASRKE TEFPAKADPI PYFSAQSAIK 120
  121 AGRESPSYTT RSTPTPRQTP ISFDQASTAR LDSGLSQNLI VSESTTFEEL TTITTSNNRT 180
  181 TRKKEIKTEM PTVNALTKQF EISSQQEKVV PLKPRKSSNV DYNGNGNSRS QNGTYTPNRS 240
  241 AIVYSPGGIL TTTIVDIEPA RFGRRTEEYK IQEEYIVQRY DNGSSPNYQR QEQGYQQQQQ 300
  301 HRSREYKTHR QEKQENYNQR SYSATENREV DAPVDTSPID VVKNVIDRWE TKIGGTTTRF 360
  361 YASDQQLRSV SRVDMNDNVP RSAQEKIIVH QRSESQPTER VIPISPLPHR VEPTRTTQSG 420
  421 GLLQTYEELK TVVVKQSSDQ TPQKIVPRAQ SPVTSPVFKE TILSPPPIPT PSPTSDIAEE 480
  481 VLRTDETTQH TAITMHSIVT KEVKQEAKEK INSVTDNAEM KEKVVEIAKN VEYEWEKKPL 540
  541 TPTPTPIPPQ QQEVKQEELK VENKIENDQN EVHLHKFLDR DYRIKTYEEY STTKRLRDRS 600
  601 QPPERPPTSY SSYSDRSRSI DRTYERRVLG SGMSRTYSEG NLNFAGLSFK FESSYNMLTV 660
  661 PLSQFLEHQN QTFGTVHFIH YFLCT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..66] deduced N/A No confident structure predictions are available.
    2 View Details [67..259] MSA 1.130994 View MSA. No confident structure predictions are available.
    3 View Details [260..373] MSA 1.130983 View MSA. No confident structure predictions are available.
    4 View Details [374..538] MSA 4.131991 View MSA. No confident structure predictions are available.
    5 View Details [539..685] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle