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Protein Overview: syp-1

General Information:
Name(s) found: syp-1 / CE33925 [WormBase]
Description(s) found:
Found 18 descriptions.
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  • WBGene00006375 locus:syp-1 status:Confirmed UniProt:G5EGS8 protein_id:CAB04186.2 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 489 amino acids

    Gene Ontology:
    Cellular Component: synaptonemal complex [IDALink to PubMed article]
    Biological Process: embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed article]
    chromosome segregation [IMPLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNFTIWVDA PTEALIETPV DDQSSGFLRD EIMLTQQYVL EKLDEQTEQD KGEQTDEQAA  60
   61 KSRELASQVQ TESQRMHDIK KELNVFKESC KSIELQLVSV KKSIPDRTKL QSGEKEKSLN 120
  121 EADYELSKFE DLLSSREREL TKIIQREQSR NNGEAKNECK RLREMIMAAK QKHEKLVELN 180
  181 SSCAMMQAKY DEMIIRQDQD REALEEGKLN LKASEEKLEQ MREDCVTLRS QLFQFEASRS 240
  241 QDKTTEIEKE IEKITAETAK VRVENEQLKA SLSKIKEDTK ILKLKYEARQ QEDIENKKLI 300
  301 EERKRSIIEL LRRKIAEKKK SNTVKGSDRK KITSLKKAIA KEQEKLEKGK KELEQLQSSK 360
  361 TESDLEEEIS AMQLEINDYD KQIKDAAKEH EKLFNQIKEQ RAANGDQFND TIDIVESDYS 420
  421 DRVVPPQPSV EVTPVHRQVS HDVFSAPLMT STPLTAATRP LKRTRAADRL KTRAEAHTAD 480
  481 VRRKRGGKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..335] PSI-BLAST 22.522879 Heavy meromyosin subfragment
    2 View Details [336..489] PSI-BLAST 9.522879 Tropomyosin


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle