| Protein: | syp-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 489 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for syp-1.
| Description | E-value | Query Range |
Subject Range |
|
|
200.0 | [0..1] | [481..1266] |
|
Region A: Residues: [1-335] |
1 11 21 31 41 51
| | | | | |
1 MDNFTIWVDA PTEALIETPV DDQSSGFLRD EIMLTQQYVL EKLDEQTEQD KGEQTDEQAA 60
61 KSRELASQVQ TESQRMHDIK KELNVFKESC KSIELQLVSV KKSIPDRTKL QSGEKEKSLN 120
121 EADYELSKFE DLLSSREREL TKIIQREQSR NNGEAKNECK RLREMIMAAK QKHEKLVELN 180
181 SSCAMMQAKY DEMIIRQDQD REALEEGKLN LKASEEKLEQ MREDCVTLRS QLFQFEASRS 240
241 QDKTTEIEKE IEKITAETAK VRVENEQLKA SLSKIKEDTK ILKLKYEARQ QEDIENKKLI 300
301 EERKRSIIEL LRRKIAEKKK SNTVKGSDRK KITSL
|
| Detection Method: |  |
| Confidence: | 22.522879 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [336-489] |
1 11 21 31 41 51
| | | | | |
1 KKAIAKEQEK LEKGKKELEQ LQSSKTESDL EEEISAMQLE INDYDKQIKD AAKEHEKLFN 60
61 QIKEQRAANG DQFNDTIDIV ESDYSDRVVP PQPSVEVTPV HRQVSHDVFS APLMTSTPLT 120
121 AATRPLKRTR AADRLKTRAE AHTADVRRKR GGKK
|
| Detection Method: | |
| Confidence: | 9.522879 |
| Match: | 2tmaA |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
