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Protein Overview: lst-2

General Information:
Name(s) found: lst-2 / CE33815 [WormBase]
Description(s) found:
Found 17 descriptions.
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  • WBGene00003084 locus:lst-2 Lateral signaling target protein 2 status:Partially_confirmed UniProt:Q9TZD0 protein_id:CCD68425.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 661 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: negative regulation of vulval development [IMP]
    Molecular Function: zinc ion binding [IEALink to PubMed article]
    phosphatidylinositol-3-phosphate binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSFRKIWNK PRPDDWMPLA RFYYADSALN DIASELDSFD GRRDPDRCNA LVTRLRVAQD  60
   61 RVLHIITEML IHLYPREQDR ACRDFRVKFP DEILHDTLPG QLWFGAECLS AGSNIIDHET 120
  121 ESDLIRPLAK DVTKQLDFLR DLLKNQSLRD PSAYNPVIKE NLLKFDKLFA EFEYQYVSAM 180
  181 VPVKSVKEHD SQLDVAVLFS EVLSLALVKD LITQDLIDYC DPSVMIAIPR LGIVWGLLVY 240
  241 SNGALNVDVP AENLSEMFRP FYSLLVKIRN LLRILTPTEL TKLETVLCKG ESAVPEDTSS 300
  301 TLTMSDFRTN ATDEEKAKNN QRVWMCDMPS DSTSSLDSSV QDSSSETTSL ASSALASPHS 360
  361 GSEENVSQIE NEEGDDEAIG TNSNSSNEVT ESPETIEEPD NVDMEESSES EVDTHIDETR 420
  421 NESDDEITDD VQASDVLQVE TKKCKSSRLL EQKKFDKSVK TIIPMQTDPR SQIDPKNLRS 480
  481 RFRSSEDLVH RLFVCIAGVA DQLQTNYSSE IRKVLKLILQ PSEIIPVYEV VNAQVANSQT 540
  541 EGEETGVEAQ ETLPLPAFMG VRWVPDEDCE QCTACSMPFN FVRRRHHCRN CGRIFCHKCS 600
  601 CNTISIPEHG YDRKVRVCNL CYVHRLNSFG CNEPMSQVNE NGATVPSVTE QQSAQTASAS 660
  661 S

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..180] MSA 2.128952 View MSA. No confident structure predictions are available.
    2 View Details [181..555] PSI-BLAST 4.522879 Heavy meromyosin subfragment
    3 View Details [556..661] PSI-BLAST 29.39794 Hrs

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  0.24093737575291 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle