| Protein: | lst-2 |
| Organism: | Caenorhabditis elegans |
| Length: | 661 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lst-2.
| Description | E-value | Query Range |
Subject Range |
|
|
543.0 | [0..1] | [650..1] |
|
Region A: Residues: [1-180] |
1 11 21 31 41 51
| | | | | |
1 MQSFRKIWNK PRPDDWMPLA RFYYADSALN DIASELDSFD GRRDPDRCNA LVTRLRVAQD 60
61 RVLHIITEML IHLYPREQDR ACRDFRVKFP DEILHDTLPG QLWFGAECLS AGSNIIDHET 120
121 ESDLIRPLAK DVTKQLDFLR DLLKNQSLRD PSAYNPVIKE NLLKFDKLFA EFEYQYVSAM 180
181
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [181-555] |
1 11 21 31 41 51
| | | | | |
1 VPVKSVKEHD SQLDVAVLFS EVLSLALVKD LITQDLIDYC DPSVMIAIPR LGIVWGLLVY 60
61 SNGALNVDVP AENLSEMFRP FYSLLVKIRN LLRILTPTEL TKLETVLCKG ESAVPEDTSS 120
121 TLTMSDFRTN ATDEEKAKNN QRVWMCDMPS DSTSSLDSSV QDSSSETTSL ASSALASPHS 180
181 GSEENVSQIE NEEGDDEAIG TNSNSSNEVT ESPETIEEPD NVDMEESSES EVDTHIDETR 240
241 NESDDEITDD VQASDVLQVE TKKCKSSRLL EQKKFDKSVK TIIPMQTDPR SQIDPKNLRS 300
301 RFRSSEDLVH RLFVCIAGVA DQLQTNYSSE IRKVLKLILQ PSEIIPVYEV VNAQVANSQT 360
361 EGEETGVEAQ ETLPL
|
| Detection Method: | |
| Confidence: | 4.522879 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [556-661] |
1 11 21 31 41 51
| | | | | |
1 PAFMGVRWVP DEDCEQCTAC SMPFNFVRRR HHCRNCGRIF CHKCSCNTIS IPEHGYDRKV 60
61 RVCNLCYVHR LNSFGCNEPM SQVNENGATV PSVTEQQSAQ TASASS
|
| Detection Method: | |
| Confidence: | 29.39794 |
| Match: | 1dvpA |
| Description: | Hrs |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.24093737575291 | bayes_pls_golite062009 |
