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Protein Overview: lsd-1

General Information:
Name(s) found: lsd-1 / CE33174 [WormBase]
Description(s) found:
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  • WBGene00011615 locus:lsd-1 status:Partially_confirmed UniProt:Q22343 protein_id:CAA90637.2 [WormBase]
  • gi|32566280|ref|NP_510000.2| Lysine-Specific histone Demethylase homolog family member (lsd-1) [Caenorhabditis elegans] [NCBI NR]
  • gi|27753116|emb|CAA90637.2| C. elegans protein T08D10.2, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • [wormpep104.fasta]
  • CE33174 WBGene00011615 corticosteroid-binding protein status:Partially_confirmed TR:Q22343 protein_id:CAA90637.2 [wormpep150.fasta]
  • 33174 WBGene00011615 corticosteroid-binding protein status:Partially_confirmed TR:Q22343 protein_id:CAA90637.2 [wormpep130-phg-ecoli-orf-rand.fasta]
  • SWIRM and AMine oXidase family member (82.3 kD) (XM569) [Caenorhabditis elegans]gi|27753116|emb|CAA90637.2| Hypothetical protein T08D10.2 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • corticosteroid-binding protein status:Partially_confirmed TR:Q22343 protein_id:CAA90637.2 [wormpep115.fasta.reversed]
  • CE33174 WBGene00011615 locus:lsd-1 corticosteroid-binding protein status:Partially_confirmed UniProt:Q22343_CAEEL protein_id:CAA90637.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE33174 WBGene00011615 locus:lsd-1 corticosteroid-binding protein status:Partially_confirmed UniProt:Q22343_CAEEL protein_id:CAA90637.2| [wormORF-contam.fasta]
  • Hypothetical protein T08D10.2 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • T08D10.2 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE33174 WBGene00011615 locus:lsd-1 corticosteroid-binding protein status:Partially_confirmed UniProt:Q22343 protein_id:CAA90637.2 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE33174 WBGene00011615 locus:lsd-1 status:Partially_confirmed UniProt:Q22343 protein_id:CAA90637.2 [wormpep246-ecoli-contam.fasta]
  • Lysine-Specific histone Demethylase homolog OS=Caenorhabditis elegans GN=lsd-1 PE=4 SV=2 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 737 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    integral to membrane [IEALink to PubMed article]
    Biological Process: electron transport [IEALink to PubMed article]
    porphyrin biosynthetic process [IEALink to PubMed article]
    Molecular Function: oxidoreductase activity [IEALink to PubMed article]
    oxygen-dependent protoporphyrinogen oxidase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGTRRKAN DDSQSSSEGS SSTTPQFIPQ VPFDFNLGSI NEEVDDSNGL TGIASVPKDI  60
   61 LTPLRDHYSL AEVARRHGIS ADRPTEIEAA FFPEVQMSRS FSDVFLMIRN TTLSIWLASA 120
  121 TTECTAEDVI KHLTPPYNTE IHLVQNIVLF LSRFGMINIG FFFPKTELVN NMEKKFVVVI 180
  181 GAGAAGIAAA TQLLTFGFDV AVVEASGLTG GRVRSLISKH GELIETGCDS LRNLDESVIT 240
  241 TLLHQVPLNE NIMSENTIVF SKGKYVPVAR CHVINGLYAN LKAGLAHASH GPEQRGENGL 300
  301 YISRQQAYEN YFNMIERSTL LSYYNFAKEK VNLNAERKHL YEVLKTNRLT ALLAEQKLKN 360
  361 TPPSDELLLK SLQIDIEKAI RQFDEACERF EICEERIADL EKNPRCKQSM HPNDFIHYNF 420
  421 LLGFEERLFG AQLEKVQFSC NVNELKLKSQ VARVQEGLAQ VLINVANERK VKIHHNQRVI 480
  481 EIDTGSSDAV ILKLRKPDGS VGILNADYVV STLPIGVLKK TIIGDERAPV FRPPLPKSKF 540
  541 AAIRSLGNGL INKIVFVFET RFWPESINQF AIVPDKISER AAMFTWSSLP ESRTLTTHYV 600
  601 GENRFHDTPV TELITKALEM LKTVFKDCPS PIDAYVTNWH TDELAFGTGT FMSLRTEPQH 660
  661 FDALKEPLKT RDGKPRVFFA GEHTSALEHG TLDGAFNSGL RAAADLANTC IEIPFINRSR 720
  721 DLIFPPYPRA RYSNEGD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..77] PSI-BLAST 19.09691 Dihydropyrimidine dehydrogenase, N-terminal domain; Dihydropyrimidine dehydrogenase, domain 4; Dihydropyrimidine dehydrogenase, domain 3; Dihydropyrimidine dehydrogenase, domain 2; Dihydropyrimidine dehydrogenase, C-terminal domain
    2 View Details [78..737] PSI-BLAST 103.0 No description for 2v1dA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.41

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle