| Protein: | lsd-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 737 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lsd-1.
| Description | E-value | Query Range |
Subject Range |
|
|
374.0 | [0..67] | [726..142] |
|
Region A: Residues: [1-77] |
1 11 21 31 41 51
| | | | | |
1 MASGTRRKAN DDSQSSSEGS SSTTPQFIPQ VPFDFNLGSI NEEVDDSNGL TGIASVPKDI 60
61 LTPLRDHYSL AEVARRH
|
| Detection Method: |  |
| Confidence: | 19.09691 |
| Match: | 1h7xA |
| Description: | Dihydropyrimidine dehydrogenase, N-terminal domain; Dihydropyrimidine dehydrogenase, domain 4; Dihydropyrimidine dehydrogenase, domain 3; Dihydropyrimidine dehydrogenase, domain 2; Dihydropyrimidine dehydrogenase, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [78-737] |
1 11 21 31 41 51
| | | | | |
1 GISADRPTEI EAAFFPEVQM SRSFSDVFLM IRNTTLSIWL ASATTECTAE DVIKHLTPPY 60
61 NTEIHLVQNI VLFLSRFGMI NIGFFFPKTE LVNNMEKKFV VVIGAGAAGI AAATQLLTFG 120
121 FDVAVVEASG LTGGRVRSLI SKHGELIETG CDSLRNLDES VITTLLHQVP LNENIMSENT 180
181 IVFSKGKYVP VARCHVINGL YANLKAGLAH ASHGPEQRGE NGLYISRQQA YENYFNMIER 240
241 STLLSYYNFA KEKVNLNAER KHLYEVLKTN RLTALLAEQK LKNTPPSDEL LLKSLQIDIE 300
301 KAIRQFDEAC ERFEICEERI ADLEKNPRCK QSMHPNDFIH YNFLLGFEER LFGAQLEKVQ 360
361 FSCNVNELKL KSQVARVQEG LAQVLINVAN ERKVKIHHNQ RVIEIDTGSS DAVILKLRKP 420
421 DGSVGILNAD YVVSTLPIGV LKKTIIGDER APVFRPPLPK SKFAAIRSLG NGLINKIVFV 480
481 FETRFWPESI NQFAIVPDKI SERAAMFTWS SLPESRTLTT HYVGENRFHD TPVTELITKA 540
541 LEMLKTVFKD CPSPIDAYVT NWHTDELAFG TGTFMSLRTE PQHFDALKEP LKTRDGKPRV 600
601 FFAGEHTSAL EHGTLDGAFN SGLRAAADLA NTCIEIPFIN RSRDLIFPPY PRARYSNEGD 660
661
|
| Detection Method: | |
| Confidence: | 103.0 |
| Match: | 2v1dA |
| Description: | No description for 2v1dA was found. |
