YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CE32463

General Information:
Name(s) found: CE32463 [WormBase]
Description(s) found:
SHOW ONLY BEST
  • WBGene00010573 Uncharacterized protein K04H4.2 status:Confirmed UniProt:P34504 protein_id:CAA81587.2 [WormBase]
  • gi|32565589|ref|NP_499059.2| hypothetical protein K04H4.2 [Caenorhabditis elegans] [NCBI NR]
  • gi|25004985|emb|CAA81587.2| C. elegans protein K04H4.2a, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • [wormpep104.fasta]
  • CE32463 WBGene00010573 Chitin-binding motifs status:Confirmed SW:P34504 protein_id:CAA81587.2 [wormpep150.fasta]
  • 32463 WBGene00010573 Chitin-binding motifs status:Confirmed SW:P34504 protein_id:CAA81587.2 [wormpep130-phg-ecoli-orf-rand.fasta]
  • tenascin XB precursor (64.1 kD) (3K438) [Caenorhabditis elegans]gi|25004985|emb|CAA81587.2| Hypothetical protein K04H4.2a [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • Chitin-binding motifs status:Partially_confirmed SW:P34504 protein_id:CAA81587.2 [wormpep115.fasta.reversed]
  • CE32463 WBGene00010573 Chitin-binding motifs status:Confirmed UniProt:YMV2_CAEEL protein_id:CAA81587.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE32463 WBGene00010573 Chitin-binding motifs status:Confirmed UniProt:YMV2_CAEEL protein_id:CAA81587.2| [wormORF-contam.fasta]
  • K04H4.2a [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein K04H4.2a [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE32463 WBGene00010573 Chitin-binding motifs status:Confirmed UniProt:P34504 protein_id:CAA81587.2 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE32463 WBGene00010573 status:Confirmed UniProt:P34504 protein_id:CAA81587.2 Uncharacterized protein K04H4.2 [wormpep246-ecoli-contam.fasta]
  • Isoform of P34504, Isoform a of Uncharacterized protein K04H4.2 OS=Caenorhabditis elegans GN=K04H4.2 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 628 amino acids

    Gene Ontology:
    Cellular Component: extracellular region [IEALink to PubMed article]
    Biological Process: locomotory behavior [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    chitin metabolic process [IEALink to PubMed article]
    growth [IMPLink to PubMed article]
    Molecular Function: chitin binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRNLILITL LVASGHGQTP VIGGTCKLGT ADVQIGGKQT QFFLKCETTA DSAEGEGVWV  60
   61 VKSRAAAAPS SVPSVPAENT QPQQHPKARK PASPNICEQD NGARESEVCA VSATCLQAHN 120
  121 DFPSSYLQCD QTTLRWVRKS CQENFLFNFE QQTCIVPKRM SSLSRQQASG LVCTFSSCSN 180
  181 SNPCSVGTCN NGYCCSSGSN SGSAIIVGGG SSNCVGCQNA PQIITIPQNS CPGGGYSVGG 240
  241 CSSGYCATGY SCIQNQCCPS YNSAPRISVY TCPSGGNAVG ACMSGRCASG YTCSNNVCCP 300
  301 QTTTTNPFVC PDGTQAAGGC VNGQCGTGYT CSNGLCCAGT STTVKCLDGS DAVGACIPSC 360
  361 TGDGCGGVQV SYYCGSGYTC TTGNICCPIN SCPNGGEVLG PTINGLCPTG YTVQGNLCCS 420
  421 ATCTDGSTGL PSVNGVCIDG YSLTNGVCCP ASVTCTDEIS IGPCTGTGFN GGCPAGYACD 480
  481 SNQVNCCPVV RYTDESCQVG PAIDGLCPPG YVVVYIPNSP LITNGVNPGT CIDLQCTTGL 540
  541 CLTANQIGDC DTATDAGTCP TGYTCFTNAG ICCSTTTFSR LRIGNSRQMA QKPNYGRPLH 600
  601 SYMPPFQMND DPVIDAANDD KSSSSVSV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..147] PSI-BLAST 13.0 NMR structure of the human NOTCH-1 ligand binding region
    2 View Details [148..211] MSA 1.335995 View MSA. No confident structure predictions are available.
    3 View Details [212..628] PSI-BLAST 14.221849 Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  0.286076792172079 bayes_pls_golite062009
  • protein binding
    		•  0.14494900666454 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle