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Protein Overview: apt-9

General Information:
Name(s) found: apt-9 / CE31628 [WormBase]
Description(s) found:
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  • WBGene00000166 locus:apt-9 status:Confirmed UniProt:Q23165 protein_id:CAA92026.2 [WormBase]
  • gi|25152290|ref|NP_509853.2| AdaPTin or adaptin-related protein family member (apt-9) [Caenorhabditis elegans] [NCBI NR]
  • gi|22265922|emb|CAA92026.2| C. elegans protein W04G3.4, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • [wormpep88.fasta]
  • CE31628 WBGene00000166 locus:apt-9 Domain present in VPS-27, Hrs and STAM status:Partially_confirmed TR:Q23165 protein_id:CAA92026.2 [wormpep150.fasta]
  • 31628 WBGene00000166 locus:apt-9 Domain present in VPS-27, Hrs and STAM status:Partially_confirmed TR:Q23165 protein_id:CAA92026.2 [wormpep130-phg-ecoli-orf-rand.fasta]
  • AdaPTin or adaptin-related protein (66.6 kD) (apt-9) [Caenorhabditis elegans]gi|22265922|emb|CAA92026.2| Hypothetical protein W04G3.4 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • locus:apt-9 Domain present in VPS-27, Hrs and STAM status:Partially_confirmed TR:Q23165 protein_id:CAA92026.2 [wormpep115.fasta.reversed]
  • CE31628 WBGene00000166 locus:apt-9 Domain present in VPS-27, Hrs and STAM status:Confirmed UniProt:Q23165_CAEEL protein_id:CAA92026.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE31628 WBGene00000166 locus:apt-9 Domain present in VPS-27, Hrs and STAM status:Confirmed UniProt:Q23165_CAEEL protein_id:CAA92026.2| [wormORF-contam.fasta]
  • Hypothetical protein W04G3.4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • AdaPTin or adaptin-related protein family member (apt-9) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE31628 WBGene00000166 locus:apt-9 Domain present in VPS-27, Hrs and STAM status:Confirmed TR:Q23165 protein_id:CAA92026.2 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • CE31628 WBGene00000166 locus:apt-9 Domain present in VPS-27, Hrs and STAM status:Confirmed UniProt:Q23165 protein_id:CAA92026.2 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE31628 WBGene00000166 locus:apt-9 status:Confirmed UniProt:Q23165 protein_id:CAA92026.2 [wormpep246-ecoli-contam.fasta]
  • AdaPTin or adaptin-related protein OS=Caenorhabditis elegans GN=apt-9 PE=1 SV=2 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 588 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: intracellular protein transport [IEALink to PubMed article]
    protein secretion [IMPLink to PubMed article]
    Molecular Function: protein N-terminus binding [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEEPVRPID YWVCRATDRF IGDEERIKAL DFIIESIYKQ PASALLAVDL FSHKLSSPSQ  60
   61 EEAMLTIRAL DYLVRNGGEK VHERCGRYKF LNELVRLIAP KYNGKLTSDA LKTEIIKLLF 120
  121 IWQLSIKHIP KYKQVYESLK LSKIITDDPH VRETEVPVFA VPPVRSSVFD NEEQAVLLKA 180
  181 LLSSNRPEDL ETANNLIKTL VETEEHKLVK IHERRKKLDH AINLCNQVEH LRLDKAAETI 240
  241 GLGNYSPDNE LTLQRVTNEL IQLQELFYGY VNELAENNDP CLEEVLNIND QINRVLPENE 300
  301 TPKCGNRAPI SARTQLDPEN QELLVFNTPT SEVPPKNGFC DPRDLEGSLL NNMIESEFVE 360
  361 EPKIVPVQQM TPVLNRNSSA SPRASGDSSI FETDFLAGKR LPEPLKPPTL NELKPNTTTI 420
  421 TLEALEVLVP PMSPEPTSLS PKAIPEKVAL NPSSIIMRNR VPIEVLYSKG MRILLYYCQS 480
  481 DMTVSNIHSY VLVIQNHNNF TIKDVNLSLK TNDKNVIIRL QDSVNNLAGF NIFGQQETIN 540
  541 LLLCIQQLND VKDVELDFTL AYKKSLESAI SGSFTLPIIP EHIFNINF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..147] PSI-BLAST 51.30103 ADP-ribosylation factor binding protein Gga3
    2 View Details [148..324] PSI-BLAST 30.0 ADP-ribosylation factor binding protein Gga1
    3 View Details [325..397] deduced N/A No confident structure predictions are available.
    4 View Details [398..588] PSI-BLAST 25.69897 ADP-ribosylation factor binding protein Gga3 domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein binding
    		•  1.44619623515316 bayes_pls_golite062009
  • binding
    		•  1.13238817008904 bayes_pls_golite062009
    2
    Term Confidence Notes
  • protein binding
    		•  1.23852637357121 bayes_pls_golite062009
  • clathrin binding
    		•  1.10771940280602 bayes_pls_golite062009
  • binding
    		•  1.00165323191449 bayes_pls_golite062009
    3 No functions predicted.
    4
    Term Confidence Notes
  • protein binding
    		•  0.859533416004855 bayes_pls_golite062009
  • binding
    		•  0.575039289605127 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle