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Protein Overview: ifa-4

General Information:
Name(s) found: ifa-4 / CE31968 [WormBase]
Description(s) found:
Found 12 descriptions.
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  • WBGene00002052 locus:ifa-4 Intermediate filament protein status:Partially_confirmed UniProt:P90900 protein_id:AAF99979.3 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 558 amino acids

    Gene Ontology:
    Cellular Component: intermediate filament [ISSLink to PubMed article]
    Biological Process: NONE FOUND
    Molecular Function: structural molecule activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSTATYGST ISSGTSRTLK ITEIGGSNLT SGMSPFGGHA ASAIRESRTR EKKEMSELND  60
   61 RLASYIEKVR FLEAQNRKME KDLNLLRGKW GHDSTSVKVM YETELRSAKD LIADSDKERA 120
  121 QLEDQIKKLV EELNNYRNKL HEAERGADVT RKELDNVLGR LGALEAEIEL LKRRISLMEE 180
  181 SIGHLKRENH RMIDSLHHAR IFQAVEQETL NRIDYQNQVQ TLLEECDFIR RIHDSEIHDL 240
  241 LAMASRDTTV ENREYFKNEL SSAIREIRSE YDHVSNTTRT DIESWYKLKV QEIHTQNSRN 300
  301 CLEQNYAREE VKRLRTTLGD MRGKMADLEG RNLLLEKQIE DLNYQMEEDM RSYEQSLNDK 360
  361 DTSINKLRDE SKILMVELQM LIDTKQTLDA EIVIYRKMLD GEENRAGLRQ LVEQVVKTTS 420
  421 IHQTKEIESL RVLKGETTSH SSYSRSAKGN IAIQEAEPSG KYIVLENISR RDENIGDWKL 480
  481 RRKIAGKREI VFTFPREFTL RAQKSVKIFA RGQGVHSPPD SLVYDLEDSF GTGNDVVTTL 540
  541 YNKEGEDRAS HSQRASHT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..69] MSA 1.539995 View MSA. No confident structure predictions are available.
    2 View Details [70..108] PSI-BLAST 3.09691 Crystal Structure Analysis of ClpB
    3 View Details [109..449] PSI-BLAST 16.39794 Heavy meromyosin subfragment
    4 View Details [450..496] PSI-BLAST 9.69897 No description for 2dfsA was found.
    5 View Details [497..558] PSI-BLAST 35.0 Lamin A/C globular tail domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle