YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CE31493

General Information:
Name(s) found: CE31493 [WormBase]
Description(s) found:
Found 16 descriptions.
SHOW ALL
  • WBGene00017929 locus:grld-1 status:Partially_confirmed UniProt:Q8MXG5 protein_id:CCD62181.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 423 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: mRNA processing [IEALink to PubMed article]
    regulation of transcription [IEALink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    RNA binding [IEALink to PubMed article]
    binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEERGRPQY RPNCNGLSSY YRERFGSHSP EVYLNLRISG FDDRLEREQI KQYLTQELKK  60
   61 YAPFEIKVVK NPEEDERLAY VNFERNDCAR KVRYTLMDRL KSVLGKRVQC DPAGILRDQE 120
  121 GKYIPDRFNR AQHGADSKRE GGSGSGNRGR PTKEPSTWRL KQDDDEATRT LFVGNMPSDV 180
  181 KEREIRHVFE EHGKVEEVDI KTPINTDAAY AFVMFQTVDQ AIQAKAEEQD RPIRAGGSRM 240
  241 KIGYGKSQVS RRLFVGGLGS WCDKEILQKA FGEFGFVENI DYDHGQPYAY VVYENTHTSQ 300
  301 EACRSLRGAC ISKGNHPIMV DYAKDLTAQP EKQQFMRKRR ASKSPVGASA VRTPPGSPKD 360
  361 VVRNFAELEE AYAATWSGKM ALKKTDYPVK FYRVYGAERL PVKLLRDEDD VPLRLLITQS 420
  421 VSD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..246] PSI-BLAST 33.39794 Poly(A)-binding protein
    2 View Details [247..344] PSI-BLAST 36.0 Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI)
    3 View Details [345..423] FFAS03 1.96 Crystal structure of the SPOC domain of the human transcriptional corepressor, SHARP.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle