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Protein Overview: lgc-27

General Information:
Name(s) found: lgc-27 / CE30328 [WormBase]
Description(s) found:
Found 19 descriptions.
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  • WBGene00022283 locus:lgc-27 status:Confirmed UniProt:H2KZY7 protein_id:CCD70546.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 428 amino acids

    Gene Ontology:
    Cellular Component: postsynaptic membrane [IEALink to PubMed article]
    membrane [IEALink to PubMed article]
    integral to membrane [IEALink to PubMed article]
    Biological Process: ion transport [IEALink to PubMed article]
    transport [IEALink to PubMed article]
    Molecular Function: extracellular ligand-gated ion channel activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEARWISLL LSLVTLSVAA YDIDCKWKSN ITDIEDVAHH KYQVLEECLF YKLTSDADRM  60
   61 QDKSNALMML PPTVAAGETL EVQVLDGSIT EMWMNEVFKE MNINGFLKLS WKDRRLRWNP 120
  121 EEWKTEVLRL KSMGRLWSPD INSDKLQTGS QSTDFVNYHD IQSNYNGNVT ARLEFRMKAQ 180
  181 CQIDYTEYPN DRKHCCFNLQ SNLYKRYVRF IMEHEGAHEM LNTKNTKTNW HIDPMYTWIS 240
  241 KMNQENDNRA ERLEVCVGVV RKSSTLAVEL TLPVLISALI LLLAPFFGKF NQQIYVKMFA 300
  301 LLLQFLSFQF LAEKTPQLGF GDNIPKIYVF YAFTIGMTVL SLIATVMISA MSRVKRKVPP 360
  361 AHRYTLLASL LNANLCCGSE EEPTTDGTSS KMSQDATSDW LQVHSALNNL SSILLIFIYI 420
  421 IGAIVIAF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..428] PSI-BLAST 68.69897 Refined structure of the nicotinic acetylcholine receptor at 4A resolution.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
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