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Protein Overview: hrpf-2

General Information:
Name(s) found: hrpf-2 / CE30324 [WormBase]
Description(s) found:
Found 17 descriptions.
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  • WBGene00022253 locus:hrpf-2 status:Confirmed UniProt:Q8MXR2 protein_id:CCD74180.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 610 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    positive regulation of multicellular organism growth [IMPLink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEQTTQPTT EDQQSAEIAV KEEEIAVKTQ SAPADAPDIH QSTIKEADES MPTKISSGEP  60
   61 PRSQYIRLRG LPFNATEKDI HEFFAGLTIE RVKFVCTTGR PNGEAYVEFK NTEEAGKAME 120
  121 NDRKEISNRY IEVFTVEADE AEFEFRPDPD SNGEVNHVIR LRGVPWSCKE DDVRKFFEGL 180
  181 EPPPAEIVIG GTGGPRSRPS GEAFVRFTTQ DAAEKAMDYN NRHMGSRYVE VFMSSMVEFN 240
  241 RAKGGGSGEY SASYERTGIR PLMSVDSGYD HGRRGGGGRY GDSSYDRGYD DYNRGSYGGR 300
  301 RDYGYNGGHD QGGRSDYGRG GDDPLRVYMR GLPYDADDHA IAAFFSPLRC HSVKIGINET 360
  361 GRPSGDAIAE FDNYNDLQVA LSRNNQRMGR RYVELFDNRG APGPMRRLLW KETSGTNASA 420
  421 APAPDPILNG GRRGGGPPQR DSGYRAGPQA MPPSYRESRD PYGPREPRGY DIEPKYEPRG 480
  481 IPPRSAPIRA PPAAHGRAPD TWGSYGAAST GPSYDQSSAA GGYAASWDAY YASQAQSAYS 540
  541 AEPASTYPTA AHSAYGSGES YSYGASAGGA YDRQREPRDS QPTWAQQQQP SHHSAYGGWG 600
  601 AGAGDHRSGY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run None Entered No Comments Cheeseman, I.M., et al. (2004)
    View Run hcp-1 hcp1 IP from december2004 Cheeseman, I.M., et al. (2005)
    View Run hcp-2 hcp2 ip from december Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..242] PSI-BLAST 55.39794 Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI)
    2 View Details [243..417] FFAS03 3.98 Nuclear ribonucleoprotein A1 (RNP A1, UP1)
    3 View Details [418..610] PSI-BLAST 5.69897 Sec24

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.10590295737522 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.43479844212501 bayes_pls_golite062009
  • RNA binding
    		•  0.426544317458995 bayes_pls_golite062009
  • protein binding
    		•  0.303849616374798 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  1.94223327190566 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.16612452230529 bayes_pls_golite062009
  • protein binding
    		•  0.239750622810233 bayes_pls_golite062009
  • RNA binding
    		•  0.0177644575880578 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle