| Protein: | hrpf-2 |
| Organism: | Caenorhabditis elegans |
| Length: | 610 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hrpf-2.
| Description | E-value | Query Range |
Subject Range |
|
|
274.0 | [0..65] | [588..12] |
|
Region A: Residues: [1-242] |
1 11 21 31 41 51
| | | | | |
1 MSEQTTQPTT EDQQSAEIAV KEEEIAVKTQ SAPADAPDIH QSTIKEADES MPTKISSGEP 60
61 PRSQYIRLRG LPFNATEKDI HEFFAGLTIE RVKFVCTTGR PNGEAYVEFK NTEEAGKAME 120
121 NDRKEISNRY IEVFTVEADE AEFEFRPDPD SNGEVNHVIR LRGVPWSCKE DDVRKFFEGL 180
181 EPPPAEIVIG GTGGPRSRPS GEAFVRFTTQ DAAEKAMDYN NRHMGSRYVE VFMSSMVEFN 240
241 RA
|
| Detection Method: |  |
| Confidence: | 55.39794 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.10590295737522 | bayes_pls_golite062009 |
| nucleic acid binding | 1.43479844212501 | bayes_pls_golite062009 |
| RNA binding | 0.426544317458995 | bayes_pls_golite062009 |
| protein binding | 0.303849616374798 | bayes_pls_golite062009 |
|
Region A: Residues: [243-417] |
1 11 21 31 41 51
| | | | | |
1 KGGGSGEYSA SYERTGIRPL MSVDSGYDHG RRGGGGRYGD SSYDRGYDDY NRGSYGGRRD 60
61 YGYNGGHDQG GRSDYGRGGD DPLRVYMRGL PYDADDHAIA AFFSPLRCHS VKIGINETGR 120
121 PSGDAIAEFD NYNDLQVALS RNNQRMGRRY VELFDNRGAP GPMRRLLWKE TSGTN
|
| Detection Method: | |
| Confidence: | 3.98 |
| Match: | 1l3kA |
| Description: | Nuclear ribonucleoprotein A1 (RNP A1, UP1) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.94223327190566 | bayes_pls_golite062009 |
| nucleic acid binding | 1.16612452230529 | bayes_pls_golite062009 |
| protein binding | 0.239750622810233 | bayes_pls_golite062009 |
| RNA binding | 0.0177644575880578 | bayes_pls_golite062009 |
|
Region A: Residues: [418-610] |
1 11 21 31 41 51
| | | | | |
1 ASAAPAPDPI LNGGRRGGGP PQRDSGYRAG PQAMPPSYRE SRDPYGPREP RGYDIEPKYE 60
61 PRGIPPRSAP IRAPPAAHGR APDTWGSYGA ASTGPSYDQS SAAGGYAASW DAYYASQAQS 120
121 AYSAEPASTY PTAAHSAYGS GESYSYGASA GGAYDRQREP RDSQPTWAQQ QQPSHHSAYG 180
181 GWGAGAGDHR SGY
|
| Detection Method: | |
| Confidence: | 5.69897 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
