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Protein Overview: lgc-54

General Information:
Name(s) found: lgc-54 / CE30301 [WormBase]
Description(s) found:
Found 16 descriptions.
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  • WBGene00020528 locus:lgc-54 ligand-gated ionic channel protein status:Partially_confirmed UniProt:O17041 protein_id:AAB69969.2 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 435 amino acids

    Gene Ontology:
    Cellular Component: postsynaptic membrane [IEALink to PubMed article]
    membrane [IEALink to PubMed article]
    integral to membrane [IEALink to PubMed article]
    Biological Process: ion transport [IEALink to PubMed article]
    transport [IEALink to PubMed article]
    Molecular Function: neurotransmitter receptor activity [IEALink to PubMed article]
    extracellular ligand-gated ion channel activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVFKQNLKK KLTQPNSPRE HSFPGEPAND TISQLVLRRL FDDNYNKNTV PLKTSATVVS  60
   61 VEFGIQNIAQ VSEISASFTL DLLFSQIWHD PRLRFDHLTN CLQNLTLGYS MVEKLWTPNV 120
  121 CFVNSKKTEI HSSPTPNIFL MIYPNGTVWV NYRLQVQSPC MVDLVLFPMD IMNCELIIES 180
  181 YAYNAAKVKL NWREWQPVFS IAKSKLSDFT LYGLQWTKNS FEYAAGQWDQ VSSFCSLNCF 240
  241 SKMDGFQLTV SLTFSRAYGF YILQMYIPTY SSVFLSFVSF WIDLKALPAR ITLGVSSLMA 300
  301 LTFQYGNVAK NLPRVGYVKS IDVYMVLTTA FIFLTMIEVA FVCYLDSENN LRRKERQAEK 360
  361 KKERVAVLQR KKDRKKNNYG ATTVTNANAA ESDLRSNYDE PFSQNGTTSH KISISRQANN 420
  421 MFESLHALAQ FGTFK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..435] PSI-BLAST 69.522879 Refined structure of the nicotinic acetylcholine receptor at 4A resolution.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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