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Protein Overview: vps-33.2

General Information:
Name(s) found: vps-33.2 / CE30636 [WormBase]
Description(s) found:
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  • WBGene00016960 locus:vps-33.2 status:Partially_confirmed UniProt:Q18891 protein_id:CCD68172.1 [WormBase]
  • gi|25149735|ref|NP_495342.2| related to yeast Vacuolar Protein Sorting factor family member (vps-33.2) [Caenorhabditis elegans] [NCBI NR]
  • gi|20451215|gb|AAA68769.3| Related to yeast vacuolar protein sorting factor protein 33.2, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • [wormpep79.fasta]
  • CE30636 WBGene00016960 status:Partially_confirmed TR:Q18891 protein_id:AAA68769.3 [wormpep150.fasta]
  • 30636 WBGene00016960 status:Partially_confirmed TR:Q18891 protein_id:AAA68769.3 [wormpep130-phg-ecoli-orf-rand.fasta]
  • protein vacuolar sorting 33 (71.6 kD) (2G893) [Caenorhabditis elegans]gi|20451215|gb|AAA68769.3| Hypothetical protein C56C10.1 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • status:Partially_confirmed TR:Q18891 protein_id:AAA68769.3 [wormpep115.fasta.reversed]
  • CE30636 status:Partially_confirmed TR:Q18891 protein_id:AAA68769.3 [wormpep80.hongbin]
  • CE30636 WBGene00016960 locus:vps-33.2 status:Partially_confirmed UniProt:Q18891_CAEEL protein_id:AAA68769.3 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE30636 WBGene00016960 locus:vps-33.2 status:Partially_confirmed UniProt:Q18891_CAEEL protein_id:AAA68769.3| [wormORF-contam.fasta]
  • C56C10.1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein C56C10.1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE30636 WBGene00016960 locus:vps-33.2 status:Partially_confirmed TR:Q18891 protein_id:AAA68769.3 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • CE30636 WBGene00016960 locus:vps-33.2 status:Partially_confirmed UniProt:Q18891 protein_id:AAA68769.3 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE30636 WBGene00016960 locus:vps-33.2 status:Partially_confirmed UniProt:Q18891 protein_id:CCD68172.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • Related to yeast Vacuolar Protein Sorting factor OS=Caenorhabditis elegans GN=vps-33.2 PE=1 SV=3 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 617 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: vesicle-mediated transport [IEALink to PubMed article]
    vesicle docking during exocytosis [IEALink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPGTAELEI DETLHLLRMV MQREFIHYLE TLPGTKELFI DKCLLRPLDM IATSSDMKRH  60
   61 GVKRIMHFDL QKSPQVWNIE IDQRVFFLRP NVENARKIVE YVEESSENRS ICVIWCNRQL 120
  121 EECDLAFESS GVIGHITQLS LNMCLLPLES DLFSLQHVES AQPDLFSVAN MFVALQNLYG 180
  181 VIPTVYGLGS ESKNLWNLVH ALCSSNELRA RPDQPISHLF LFDRQLDPVP VLLTGASYEG 240
  241 LLHEFFTIDC GKLAFPVDLR KQVQTGPLDF DWIEINPEED KEAHQQNRGD TVKLDNCEDI 300
  301 FASIRNKHVT AALEFLHSKA KSIQKSIEKS SMIDDVADYR NFVEKDLRAL KKDHKHCELH 360
  361 INACEMMMNK VKMEDYRTMF KLEHEMLLGT VTHEEYFDFV FERVPMRSCR DVVLSMMSLA 420
  421 SLKLDGVPDD TYNEFVEMYL QKYGYEHMFE LQNLRNSRVI YARRHIAHDR TISERARTWE 480
  481 TLARKFRIVK GNEPMDMSNP SDMSYVFGAR ISPLLCKIVE DTIDHGWNQA EYERIIGKDK 540
  541 VLVEENTYIA ADRRPDNRTR KAIMVFVNGG ITYWEVAALR LLAIQKNFRI LICTTHVIKK 600
  601 REYLEVRAKD ASSVFGS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..617] PSI-BLAST 125.0 Neuronal Sec1, NSec1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • SNARE binding
    		•  3.42828022195984 bayes_pls_golite062009
  • binding
    		•  2.7837022903231 bayes_pls_golite062009
  • syntaxin binding
    		•  2.11416428645287 bayes_pls_golite062009
  • protein binding
    		•  1.7224010512877 bayes_pls_golite062009
  • syntaxin-1 binding
    		•  0.269372794919901 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.89

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle