| Protein: | vps-33.2 |
| Organism: | Caenorhabditis elegans |
| Length: | 617 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vps-33.2.
| Description | E-value | Query Range |
Subject Range |
|
|
452.0 | [0..1] | [610..1] |
|
Region A: Residues: [1-617] |
1 11 21 31 41 51
| | | | | |
1 MAPGTAELEI DETLHLLRMV MQREFIHYLE TLPGTKELFI DKCLLRPLDM IATSSDMKRH 60
61 GVKRIMHFDL QKSPQVWNIE IDQRVFFLRP NVENARKIVE YVEESSENRS ICVIWCNRQL 120
121 EECDLAFESS GVIGHITQLS LNMCLLPLES DLFSLQHVES AQPDLFSVAN MFVALQNLYG 180
181 VIPTVYGLGS ESKNLWNLVH ALCSSNELRA RPDQPISHLF LFDRQLDPVP VLLTGASYEG 240
241 LLHEFFTIDC GKLAFPVDLR KQVQTGPLDF DWIEINPEED KEAHQQNRGD TVKLDNCEDI 300
301 FASIRNKHVT AALEFLHSKA KSIQKSIEKS SMIDDVADYR NFVEKDLRAL KKDHKHCELH 360
361 INACEMMMNK VKMEDYRTMF KLEHEMLLGT VTHEEYFDFV FERVPMRSCR DVVLSMMSLA 420
421 SLKLDGVPDD TYNEFVEMYL QKYGYEHMFE LQNLRNSRVI YARRHIAHDR TISERARTWE 480
481 TLARKFRIVK GNEPMDMSNP SDMSYVFGAR ISPLLCKIVE DTIDHGWNQA EYERIIGKDK 540
541 VLVEENTYIA ADRRPDNRTR KAIMVFVNGG ITYWEVAALR LLAIQKNFRI LICTTHVIKK 600
601 REYLEVRAKD ASSVFGS
|
| Detection Method: |  |
| Confidence: | 125.0 |
| Match: | 1dn1A |
| Description: | Neuronal Sec1, NSec1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| SNARE binding | 3.42828022195984 | bayes_pls_golite062009 |
| binding | 2.7837022903231 | bayes_pls_golite062009 |
| syntaxin binding | 2.11416428645287 | bayes_pls_golite062009 |
| protein binding | 1.7224010512877 | bayes_pls_golite062009 |
| syntaxin-1 binding | 0.269372794919901 | bayes_pls_golite062009 |
