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Protein Overview: efn-4

General Information:
Name(s) found: efn-4 / CE29503 [WormBase]
Description(s) found:
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  • WBGene00001165 locus:efn-4 Ephrin-4 status:Confirmed UniProt:O44516 protein_id:CCD65257.1 [WormBase]
  • gi|74958508|sp|O44516.2|EFN4_CAEEL RecName: Full=Ephrin-4; AltName: Full=Protein male abnormal 26; Flags: Precursor [NCBI NR]
  • gi|17539606|ref|NP_499947.1| Eph(F)riN family member (efn-4) [Caenorhabditis elegans] [NCBI NR]
  • gi|15789298|gb|AAB92075.2| Eph(f)rin protein 4 [Caenorhabditis elegans] [NCBI NR]
  • gi|15667896|gb|AAL05561.1|AF410936_1 ephrin EFN-4 [Caenorhabditis elegans] [NCBI NR]
  • Ephrin-4 OS=Caenorhabditis elegans GN=efn-4 PE=2 SV=2 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE29503 WBGene00001165 locus:efn-4 status:Confirmed TR:O44516 protein_id:AAB92075.2 [wormpep150.fasta]
  • 29503 WBGene00001165 locus:efn-4 status:Confirmed TR:O44516 protein_id:AAB92075.2 [wormpep130-phg-ecoli-orf-rand.fasta]
  • male ABnormal MAB-26, Eph(F)riN (39.6 kD) (mab-26) [Caenorhabditis elegans]gi|15789298|gb|AAB92075.2| Eph(f)rin protein 4 [Caenorhabditis elegans]gi|15667896|gb|AAL05561.1| ephrin EFN-4 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • locus:efn-4 status:Confirmed TR:O44516 protein_id:AAB92075.2 [wormpep115.fasta.reversed]
  • CE29503 locus:efn-4 status:Confirmed [wormpep80.hongbin]
  • CE29503 WBGene00001165 locus:efn-4 status:Confirmed UniProt:O44516 protein_id:AAB92075.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE29503 WBGene00001165 locus:efn-4 status:Confirmed UniProt:O44516 protein_id:AAB92075.2| [wormORF-contam.fasta]
  • ephrin EFN-4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Eph(F)riN family member (efn-4) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Eph(f)rin protein 4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Ephrin-4 precursor (Male abnormal protein 26) [nr-271106-contam.fasta]
  • CE29503 WBGene00001165 locus:efn-4 status:Confirmed SW:O44516 protein_id:AAB92075.2 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE29503 WBGene00001165 locus:efn-4 status:Confirmed UniProt:O44516 protein_id:CCD65257.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE29503 WBGene00001165 locus:efn-4 status:Confirmed UniProt:O44516 protein_id:CCD65257.1 Ephrin-4 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 348 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEALink to PubMed article]
    neuronal cell body [IDALink to PubMed article]
    cell surface [IDALink to PubMed article]
    Biological Process: embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    tail tip morphogenesis [IGILink to PubMed article][IMPLink to PubMed article]
    regulation of cell adhesion [IGILink to PubMed article][IMPLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQFFEFLIT TFLLLGLAAA DEHIVYWNST NSLFRNRQPT IEVRMGDVVR FVCPDNEEGR  60
   61 NDGEYLIVYE VTEFAMDDCA LESHSREVIR CAPEGTAEKV LRTQQLSGGR REDWKKQKVP 120
  121 PKNVAQLIRQ LNPIPNGKEY QPGQTYYYMT TSTGKANGTN HRMYGLCESQ NMRLSMKVSA 180
  181 SQPHPTRRAP TRRQEDFVTT ASAELMGGQE DEDSDNDNAH LLPRDLEGST NPKFRRPSQL 240
  241 ETAGVENQQF MKVVQMAQAG KTGTFENEKE AIAQKSSEKD GWHPVNVQYV ADLMNNAYQN 300
  301 ADERISYQRD FEIHEENDLA VKSLEYSSSS TSLSTNFAIL LAVIYVLY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..245] PSI-BLAST 53.0 Ephrin-b2 ectodomain
    2 View Details [246..348] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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