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Protein Overview: CE29406

General Information:
Name(s) found: CE29406 [WormBase]
Description(s) found:
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  • WBGene00018948 status:Confirmed UniProt:Q20864 protein_id:CCD61829.1 [WormBase]
  • gi|17553664|ref|NP_498611.1| hypothetical protein F56C9.3 [Caenorhabditis elegans] [NCBI NR]
  • gi|15718597|gb|AAK18959.2| Hypothetical protein F56C9.3 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE29406 WBGene00018948 status:Confirmed TR:Q20864 protein_id:AAK18959.2 [wormpep150.fasta]
  • 29406 WBGene00018948 status:Confirmed TR:Q20864 protein_id:AAK18959.2 [wormpep130-phg-ecoli-orf-rand.fasta]
  • cation Diffusion Facilitator family member (50.3 kD) (cdf-2) [Caenorhabditis elegans]gi|15718597|gb|AAK18959.2| Hypothetical protein F56C9.3 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • status:Confirmed TR:Q20864 protein_id:AAK18959.2 [wormpep115.fasta.reversed]
  • CE29406 status:Partially_confirmed TR:Q20864 protein_id:AAK18959.2 [wormpep80.hongbin]
  • CE29406 WBGene00018948 status:Confirmed UniProt:Q20864_CAEEL protein_id:AAK18959.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE29406 WBGene00018948 status:Confirmed UniProt:Q20864_CAEEL protein_id:AAK18959.2| [wormORF-contam.fasta]
  • Hypothetical protein F56C9.3 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • F56C9.3 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE29406 WBGene00018948 status:Confirmed UniProt:Q20864 protein_id:AAK18959.2 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE29406 WBGene00018948 status:Confirmed UniProt:Q20864 protein_id:CCD61829.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • Uncharacterized protein OS=Caenorhabditis elegans GN=CELE_F56C9.3 PE=1 SV=2 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 446 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEALink to PubMed article]
    Biological Process: cation transport [IEALink to PubMed article]
    Molecular Function: cation transmembrane transporter activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSSQTEHK NPEVSASNSS SSSTDNTTDN TTSDEEKLVK RAQAAKKQLT EYYKKQNEIL  60
   61 DHFKQDSEQI EATRRTKIRH QSLKSNESEF SEVNEHDHLS SLKASTVSIH SKDSLMVRHE 120
  121 EAQNEEIKLT KAAARLAHIT LFVNLVLMLA KIFASYLSGS MSIISSMVDS VVDLTSGAVL 180
  181 SISSRMIRKR DPYQYPRGRT RVEPLSLILI SVIMGMASVQ LIISSVRRIH DAAVYGIKDP 240
  241 INVSWPTIAI MGSTIAVKLT LFIICQKYKS NSSIKVLSLD HRNDCISNSM ALACAWLAFY 300
  301 YTVKDGDEKS GAVVFEKQFD LYYLDPAGAI LVSVYILYTW IRTGYAHFVM LSGKSAHPEL 360
  361 INRIVHQCIE HDPRITHIDT VYVYHYGTKF LVEVHIVLDQ NMSLKVTHDI AESLQTGIES 420
  421 LPEIERAFVH CDYEFEHHPH DEHKAV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..126] PSI-BLAST 5.69897 No description for 2enkA was found.
    2 View Details [127..446] PSI-BLAST 55.0 No description for 2qfiA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • cation transmembrane transporter activity
    		•  4.5307404935943 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  4.4634224995221 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  4.1916987544196 bayes_pls_golite062009
  • transporter activity
    		•  2.72282838578572 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  2.61155472577391 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  2.37288341875523 bayes_pls_golite062009
  • efflux transmembrane transporter activity
    		•  1.43383523050563 bayes_pls_golite062009
  • inorganic cation transmembrane transporter activity
    		•  0.253156897715141 bayes_pls_golite062009
  • binding
    		•  0.112542057149574 bayes_pls_golite062009
  • metal ion transmembrane transporter activity
    		•  0.0523266677042269 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle