YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE29406
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSSQTEHK NPEVSASNSS SSSTDNTTDN TTSDEEKLVK RAQAAKKQLT EYYKKQNEIL  60
   61 DHFKQDSEQI EATRRTKIRH QSLKSNESEF SEVNEHDHLS SLKASTVSIH SKDSLMVRHE 120
  121 EAQNEEIKLT KAAARLAHIT LFVNLVLMLA KIFASYLSGS MSIISSMVDS VVDLTSGAVL 180
  181 SISSRMIRKR DPYQYPRGRT RVEPLSLILI SVIMGMASVQ LIISSVRRIH DAAVYGIKDP 240
  241 INVSWPTIAI MGSTIAVKLT LFIICQKYKS NSSIKVLSLD HRNDCISNSM ALACAWLAFY 300
  301 YTVKDGDEKS GAVVFEKQFD LYYLDPAGAI LVSVYILYTW IRTGYAHFVM LSGKSAHPEL 360
  361 INRIVHQCIE HDPRITHIDT VYVYHYGTKF LVEVHIVLDQ NMSLKVTHDI AESLQTGIES 420
  421 LPEIERAFVH CDYEFEHHPH DEHKAV

Type	Start	End	Confidence
Cytoplasmic	1	135	0.99
Transmembrane Helix	136	155	0.93
Non-Cytoplasmic	156	162	0.74
Transmembrane Helix	163	184	0.89
Cytoplasmic	185	204	0.89
Transmembrane Helix	205	224	0.96
Non-Cytoplasmic	225	242	0.92
Transmembrane Helix	243	265	0.89
Cytoplasmic	266	284	0.92
Transmembrane Helix	285	303	0.86
Non-Cytoplasmic	304	321	0.87
Transmembrane Helix	322	341	0.84
Cytoplasmic	342	446	0.94