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Protein Overview: sqd-1

General Information:
Name(s) found: sqd-1 / CE29008 [WormBase]
Description(s) found:
Found 18 descriptions.
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  • WBGene00022235 locus:sqd-1 status:Confirmed UniProt:Q8MXR6 protein_id:CCD74155.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 305 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: gamete generation [IMPLink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEATDNKING NASETIKENG HSTKGNEDKK IFVGGISPEV NNEDLSSHFT QYGEVAQAQV  60
   61 KYDRTNGRSR GFAFVEFTTG EGCKLALAAR EQTIKGKSVE VKPAKSRENK KVFVGGLPSD 120
  121 YSEQDLRSHF EQFGKVDDIE WPFDKQTKAR RNFAFIVFEE EESADKASSQ TKQTFGTREC 180
  181 DVKKAVPQGK RFPGAQGRMP GGRGMYGGRG GNNNSGWYAG WGQIGAMPYG ATGAAWGDWY 240
  241 GNGYYGQQGA AHHNNSGSSQ GYGSGYQRNN SGFDYQQAQG ARQGNNGQPR FQQQPQQQTA 300
  301 QAQQF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run None Entered No Comments Cheeseman, I.M., et al. (2004)
    View Run None Entered No Comments Cheeseman, I.M., et al. (2004)
    View Run hcp-1 hcp1 IP from december2004 Cheeseman, I.M., et al. (2005)
    View Run hcp-2 hcp2 ip from december Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..202] PSI-BLAST 54.522879 Nuclear ribonucleoprotein A1 (RNP A1, UP1)
    2 View Details [203..305] FFAS03 1.17 Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.61022416113244 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.412705465356557 bayes_pls_golite062009
  • RNA binding
    		•  0.34960050594887 bayes_pls_golite062009
  • protein binding
    		•  0.18986095185278 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle