| Protein: | sqd-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 305 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sqd-1.
| Description | E-value | Query Range |
Subject Range |
|
|
223.0 | [0..16] | [304..1] |
|
Region A: Residues: [1-202] |
1 11 21 31 41 51
| | | | | |
1 MEATDNKING NASETIKENG HSTKGNEDKK IFVGGISPEV NNEDLSSHFT QYGEVAQAQV 60
61 KYDRTNGRSR GFAFVEFTTG EGCKLALAAR EQTIKGKSVE VKPAKSRENK KVFVGGLPSD 120
121 YSEQDLRSHF EQFGKVDDIE WPFDKQTKAR RNFAFIVFEE EESADKASSQ TKQTFGTREC 180
181 DVKKAVPQGK RFPGAQGRMP GG
|
| Detection Method: |  |
| Confidence: | 54.522879 |
| Match: | 1l3kA |
| Description: | Nuclear ribonucleoprotein A1 (RNP A1, UP1) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.61022416113244 | bayes_pls_golite062009 |
| nucleic acid binding | 0.412705465356557 | bayes_pls_golite062009 |
| RNA binding | 0.34960050594887 | bayes_pls_golite062009 |
| protein binding | 0.18986095185278 | bayes_pls_golite062009 |
|
Region A: Residues: [203-305] |
1 11 21 31 41 51
| | | | | |
1 RGMYGGRGGN NNSGWYAGWG QIGAMPYGAT GAAWGDWYGN GYYGQQGAAH HNNSGSSQGY 60
61 GSGYQRNNSG FDYQQAQGAR QGNNGQPRFQ QQPQQQTAQA QQF
|
| Detection Method: | |
| Confidence: | 1.17 |
| Match: | 1jchA |
| Description: | Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain |
Matching Structure (courtesy of the PDB): |
|
