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Protein Overview: CE28621

General Information:
Name(s) found: CE28621 [WormBase]
Description(s) found:
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  • WBGene00019759 status:Confirmed UniProt:Q23015 protein_id:CCD83483.1 [WormBase]
  • gi|17568993|ref|NP_508843.1| hypothetical protein M03F4.6 [Caenorhabditis elegans] [NCBI NR]
  • gi|15011775|gb|AAB04576.2| Hypothetical protein M03F4.6 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE28621 WBGene00019759 status:Confirmed TR:Q23015 protein_id:AAB04576.2 [wormpep150.fasta]
  • 28621 WBGene00019759 status:Partially_confirmed TR:Q23015 protein_id:AAB04576.2 [wormpep130-phg-ecoli-orf-rand.fasta]
  • tenascin XB XB1 like precursor (45.6 kD) (XF584) [Caenorhabditis elegans]gi|15011775|gb|AAB04576.2| Hypothetical protein M03F4.6 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • 28621 WBGene00019759 status:Confirmed TR:Q23015 protein_id:AAB04576.2 [wormpep150-phg-orf-ecoli-rand.fasta]
  • status:Partially_confirmed TR:Q23015 protein_id:AAB04576.2 [wormpep115.fasta.reversed]
  • CE28621 status:Partially_confirmed TR:Q23015 protein_id:AAB04576.2 [wormpep80.hongbin]
  • CE28621 WBGene00019759 status:Confirmed UniProt:Q23015_CAEEL protein_id:AAB04576.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE28621 WBGene00019759 status:Confirmed UniProt:Q23015_CAEEL protein_id:AAB04576.2| [wormORF-contam.fasta]
  • M03F4.6 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein M03F4.6 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE28621 WBGene00019759 status:Confirmed UniProt:Q23015 protein_id:AAB04576.2 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE28621 WBGene00019759 status:Confirmed UniProt:Q23015 protein_id:CCD83483.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • Uncharacterized protein OS=Caenorhabditis elegans GN=CELE_M03F4.6 PE=1 SV=2 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 413 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: locomotory behavior [IMPLink to PubMed articleLink to PubMed article]
    hermaphrodite genitalia development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    oviposition [IMPLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSPFIQVLF LFLIIDRLAL AFDVPCAQKL IGSDCLFDEE CYGMNSVCRN SRCTCPTNFE  60
   61 EYDIDERTTI CRLAPAKIGD SCQRDCKPPL LCRDGKCECW GGSIVDGKCV VLCPVGQQLY 120
  121 GVECTRVAHY QQPCEKDSQC VDPFNACIAG TCLCAPGTTR DTERGFCHAT CPDGMHPRQT 180
  181 CRRLFINDID MLENAANTDS CPLGYRCVTY GSPYVGHCCR LRCPYGEPDL SQSCDAGASP 240
  241 DSKCRPLTHF CFTVSEPGWK SSLCCPRPCR DPTPLYVNGQ CLSIAHRGDP CQIDQQCEGG 300
  301 ITMSCTLGSC QCKLGYHENN DERFLTCTKD CTLEEVASND RCLAKVQLGA RCYSNKQCIQ 360
  361 SAECRFGTCQ CRCGYKQVKD QLLGVRCTNP DDPLSIGSIL DRVGDIFGNK QGK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..413] PSI-BLAST 11.39794 Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.44119144078508 bayes_pls_golite062009
  • receptor binding
    		•  1.40618339011373 bayes_pls_golite062009
  • protein binding
    		•  1.15716342217655 bayes_pls_golite062009
  • ErbB-2 class receptor binding
    		•  0.34955601738241 bayes_pls_golite062009
  • growth factor activity
    		•  0.25853515067422 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle