| Protein: | CE28621 |
| Organism: | Caenorhabditis elegans |
| Length: | 413 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE28621.
| Description | E-value | Query Range |
Subject Range |
|
|
288.0 | [0..1] | [411..2088] |
|
Region A: Residues: [1-413] |
1 11 21 31 41 51
| | | | | |
1 MHSPFIQVLF LFLIIDRLAL AFDVPCAQKL IGSDCLFDEE CYGMNSVCRN SRCTCPTNFE 60
61 EYDIDERTTI CRLAPAKIGD SCQRDCKPPL LCRDGKCECW GGSIVDGKCV VLCPVGQQLY 120
121 GVECTRVAHY QQPCEKDSQC VDPFNACIAG TCLCAPGTTR DTERGFCHAT CPDGMHPRQT 180
181 CRRLFINDID MLENAANTDS CPLGYRCVTY GSPYVGHCCR LRCPYGEPDL SQSCDAGASP 240
241 DSKCRPLTHF CFTVSEPGWK SSLCCPRPCR DPTPLYVNGQ CLSIAHRGDP CQIDQQCEGG 300
301 ITMSCTLGSC QCKLGYHENN DERFLTCTKD CTLEEVASND RCLAKVQLGA RCYSNKQCIQ 360
361 SAECRFGTCQ CRCGYKQVKD QLLGVRCTNP DDPLSIGSIL DRVGDIFGNK QGK
|
| Detection Method: |  |
| Confidence: | 11.39794 |
| Match: | 1n7dA |
| Description: | Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.44119144078508 | bayes_pls_golite062009 |
| receptor binding | 1.40618339011373 | bayes_pls_golite062009 |
| protein binding | 1.15716342217655 | bayes_pls_golite062009 |
| ErbB-2 class receptor binding | 0.34955601738241 | bayes_pls_golite062009 |
| growth factor activity | 0.25853515067422 | bayes_pls_golite062009 |
