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Protein Overview: snn-1

General Information:
Name(s) found: snn-1 / CE28520 [WormBase]
Description(s) found:
Found 19 descriptions.
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  • WBGene00004913 locus:snn-1 status:Confirmed UniProt:G5EGI2 protein_id:CCD72727.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 401 amino acids

    Gene Ontology:
    Cellular Component: synaptic vesicle [IEALink to PubMed article]
    Biological Process: neurotransmitter secretion [IEALink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDAKVLLVI DSHHVDWSKY FRNHTEYAIR VEQGDIDELD VMCTEKNCTV ELNTPGKDVR  60
   61 TFTPSAVFLG AGATRCAQLK TITRAFIAAH IPFLNSHTSA VAFLDRNNLK KQLKKITLSD 120
  121 GASIPMLPIV HYPHFHKFHQ SQSSTYPMVV SVNEGFQGIG KIKVNNHEEL CDVEGMLQIM 180
  181 SKGDTEVEVQ PFVDAKYDLH IQKIGHEYKT FIRRGICKHW KSNVGSSVLE QISTCERHKK 240
  241 YLKAITDHVG PMHICSIDIL VSKEGREFVH DVNDVIAYFG ESAEDDRRAA SLLLRALVAP 300
  301 RITSPIAAEP PATSPTTSAV TNGHGNHGPA PAVPTRRLPP HPSSSSAAPP RGHMSDKVES 360
  361 RHKDHYDPPP QIPRTGSRES VSYVDDTMGQ LKRTFAGFFG E

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..305] PSI-BLAST 69.522879 Synapsin II
    2 View Details [306..401] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.55682538146294 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.86

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle