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Protein Overview: CE28111

General Information:
Name(s) found: CE28111 [WormBase]
Description(s) found:
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  • WBGene00012496 status:Partially_confirmed UniProt:Q9U2Q7 protein_id:CAB60325.2 [WormBase]
  • gi|17543026|ref|NP_502188.1| hypothetical protein Y24F12A.1 [Caenorhabditis elegans] [NCBI NR]
  • gi|14530633|emb|CAB60325.2| C. elegans protein Y24F12A.1, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE28111 WBGene00012496 status:Partially_confirmed TR:Q9U2Q7 protein_id:CAB60325.2 [wormpep150.fasta]
  • 28111 WBGene00012496 status:Partially_confirmed TR:Q9U2Q7 protein_id:CAB60325.2 [wormpep130-phg-ecoli-orf-rand.fasta]
  • deoxyribonuclease like (49.6 kD) (4M371) [Caenorhabditis elegans]gi|14530633|emb|CAB60325.2| Hypothetical protein Y24F12A.1 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • status:Partially_confirmed TR:Q9U2Q7 protein_id:CAB60325.2 [wormpep115.fasta.reversed]
  • CE28111 status:Partially_confirmed TR:Q9U2Q7 protein_id:CAB60325.2 [wormpep80.hongbin]
  • CE28111 WBGene00012496 status:Partially_confirmed UniProt:Q9U2Q7_CAEEL protein_id:CAB60325.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE28111 WBGene00012496 status:Partially_confirmed UniProt:Q9U2Q7_CAEEL protein_id:CAB60325.2| [wormORF-contam.fasta]
  • Y24F12A.1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein Y24F12A.1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE28111 WBGene00012496 status:Partially_confirmed UniProt:Q9U2Q7 protein_id:CAB60325.2 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • Uncharacterized protein OS=Caenorhabditis elegans GN=CELE_Y24F12A.1 PE=1 SV=2 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 437 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: endodeoxyribonuclease activity, producing 5'-phosphomonoesters [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRKKASSE VYVPPGRRSE GGSSNGGTPL KKEAPETDDV VPPNCCDDEE ERETKYQNLE  60
   61 QQFGAIAIGS SSSSNWRSQM NPTGLSKEFQ EMNIARRSAG KTDLLQKSTR RLGGSKNQNN 120
  121 EQDVTSSGDI IDYFLQLNVP YIDSHCHTDY MYTSLARRKT NSNEGLLDWI EKYPRAFPKC 180
  181 FFGLIANFIK PDLFVDVKGN SSYDVEWIVK ELASPLYLGT TWGCHPHFAQ HWGRMGVFWT 240
  241 TMEYILSDAE EWKVLAVGEC GIDLHRCESE LEVQKDVFEK HVALAFKFKL PLVIHCRNGS 300
  301 KGRAEEECLQ ILKKKMDVNH KFLKIHRHCF TENWEVAQMW LKQCPDVHFG FTPAVFTMGA 360
  361 PQIQAIRNIP LDRILLETDG PYFKPKCYDG VAPPKVCLPG MAIATASKIA EIKNLPIEEV 420
  421 LRATFNNTRR VYQLPVY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..138] deduced N/A No confident structure predictions are available.
    2 View Details [139..437] PSI-BLAST 72.045757 Crystal structure of YCFH, TATD homolog from Escherichia coli K12, at 1.9 A resolution

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  1.70199291046899 bayes_pls_golite062009
  • hydrolase activity
    		•  1.04815645927894 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle