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Protein Overview: CE27840

General Information:
Name(s) found: CE27840 [WormBase]
Description(s) found:
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  • WBGene00016549 status:Confirmed UniProt:Q9TZA8 protein_id:CCD66467.1 [WormBase]
  • gi|17532347|ref|NP_494197.1| hypothetical protein C40A11.6 [Caenorhabditis elegans] [NCBI NR]
  • gi|14573929|gb|AAC68757.2| Hypothetical protein C40A11.6 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE27840 WBGene00016549 status:Partially_confirmed TR:Q9TZA8 protein_id:AAC68757.2 [wormpep150.fasta]
  • 27840 WBGene00016549 status:Partially_confirmed TR:Q9TZA8 protein_id:AAC68757.2 [wormpep130-phg-ecoli-orf-rand.fasta]
  • tumor necrosis factor alpha-inducible protein PDIP1 like family member (2C434) [Caenorhabditis elegans]gi|14573929|gb|AAC68757.2| Hypothetical protein C40A11.6 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • status:Partially_confirmed TR:Q9TZA8 protein_id:AAC68757.2 [wormpep115.fasta.reversed]
  • CE27840 status:Partially_confirmed TR:Q9TZA8 protein_id:AAC68757.2 [wormpep80.hongbin]
  • CE27840 WBGene00016549 status:Partially_confirmed UniProt:Q9TZA8_CAEEL protein_id:AAC68757.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE27840 WBGene00016549 status:Partially_confirmed UniProt:Q9TZA8_CAEEL protein_id:AAC68757.2| [wormORF-contam.fasta]
  • Hypothetical protein C40A11.6 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • C40A11.6 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE27840 WBGene00016549 status:Partially_confirmed UniProt:Q9TZA8 protein_id:AAC68757.2 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE27840 WBGene00016549 status:Confirmed UniProt:Q9TZA8 protein_id:CCD66467.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • Uncharacterized protein OS=Caenorhabditis elegans GN=C40A11.6 PE=4 SV=2 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 218 amino acids

    Gene Ontology:
    Cellular Component: voltage-gated potassium channel complex [IEALink to PubMed article]
    membrane [IEALink to PubMed article]
    Biological Process: potassium ion transport [IEALink to PubMed article]
    Molecular Function: voltage-gated potassium channel activity [IEALink to PubMed article]
    protein binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCFSETIVKL NVGGSVFETW KSTLTKQDGF FKTLIETNVP VKKDTSDCYF IDRSPKYFET  60
   61 VLNYMRSGVT VLPDSEKELQ ELKKEAEFYL LEHLVDLCEP IKNKIRTYGS SHELLQIIAS 120
  121 TNKPVVVINY LIHNNDIIFV PKEFQFSEFI EKNREYLEIY FQPMNKREPW PIDLTNKLIL 180
  181 TPEPLWSFRI YNITHPCCDF FKDLPSLQKK IGDVLNDE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..218] PSI-BLAST 33.0 Mammalian Shaker Kv1.2 potassium channel- beta subunit complex


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle