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Protein Overview: CE27709

General Information:
Name(s) found: CE27709 [WormBase]
Description(s) found:
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  • WBGene00015943 locus:tiar-1 status:Confirmed UniProt:Q95QV7 protein_id:CCD65016.1 [WormBase]
  • gi|17531963|ref|NP_495120.1| hypothetical protein C18A3.5 [Caenorhabditis elegans] [NCBI NR]
  • gi|14573834|gb|AAK68192.1|U28944_6 Hypothetical protein C18A3.5b [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE27709 WBGene00015943 status:Confirmed TR:Q95QV7 protein_id:AAK68192.1 [wormpep150.fasta]
  • 27709 WBGene00015943 status:Confirmed TR:Q95QV7 protein_id:AAK68192.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • RNA-binding region RNP-1 family member (41.6 kD) (2G2) [Caenorhabditis elegans]gi|14573834|gb|AAK68192.1| Hypothetical protein C18A3.5b [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • status:Confirmed TR:Q95QV7 protein_id:AAK68192.1 [wormpep115.fasta.reversed]
  • CE27709 status:Confirmed TR:Q95QV7 protein_id:AAK68192.1 [wormpep80.hongbin]
  • CE27709 WBGene00015943 status:Confirmed UniProt:Q95QV7_CAEEL protein_id:AAK68192.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE27709 WBGene00015943 status:Confirmed UniProt:Q95QV7_CAEEL protein_id:AAK68192.1| [wormORF-contam.fasta]
  • C18A3.5b [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein C18A3.5b [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE27709 WBGene00015943 status:Confirmed UniProt:Q95QV7 protein_id:AAK68192.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE27709 WBGene00015943 locus:tiar-1 status:Confirmed UniProt:Q95QV7 protein_id:CCD65016.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • Isoform of Q95QV8, TIA-1/TIAL RNA binding protein homolog OS=Caenorhabditis elegans GN=tiar-1 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 376 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: morphogenesis of an epithelium [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    mRNA processing [IEALink to PubMed article]
    growth [IMPLink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    RNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFFNPPANS NHGYNDDVNT GYNARMHSKL AEREGFHLGN GSDEPRTLYV GNLDSTVTED  60
   61 FIATLFNQIG SVTKTKVIFD EMKVNWAVEP GQQQSKIDTT RHFHVFVGDL SSEVDNQKLR 120
  121 EAFQPFGDVS DAKVIRDTNT TKSKGYGFVS YPKREEAERA IEQMNGQWLG RRTIRTNWAT 180
  181 RKPGDQEKPS HYNEKSYDEI YNQTSGDNTS VYVGNIASLT EDEIRQGFAS FGRITEVRIF 240
  241 KMQGYAFVKF DNKDAAAKAI VQMNNQDVGG QLVRCSWGKT GDTGKTPGGS YGYGYGNSSS 300
  301 GGNSQPYSGY GGGGAYGGGQ GGGGHGGPGQ QQSNANSQYW QYYAQYYNNP QLMQQWSNYW 360
  361 QQQGGAPQQQ NSGGHQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run None Entered No Comments Cheeseman, I.M., et al. (2004)
    View Run hcp-1 hcp1 IP from december2004 Cheeseman, I.M., et al. (2005)
    View Run hcp-2 hcp2 ip from december Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..94] FFAS03 3.44 NMR solution structure of TcUBP1, a single RBD-unit from Trypanosoma cruzi
    2 View Details [95..314] PSI-BLAST 41.522879 Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI)
    3 View Details [315..376] MSA 1.447996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.2253781553459 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.266454831568309 bayes_pls_golite062009
  • RNA binding
    		•  0.0143316548997158 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  1.38904784081546 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.535128751388028 bayes_pls_golite062009
  • RNA binding
    		•  0.423111514770653 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle