| Protein: | CE27709 |
| Organism: | Caenorhabditis elegans |
| Length: | 376 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE27709.
| Description | E-value | Query Range |
Subject Range |
|
|
274.0 | [0..4] | [374..59] |
|
Region A: Residues: [1-94] |
1 11 21 31 41 51
| | | | | |
1 MSFFNPPANS NHGYNDDVNT GYNARMHSKL AEREGFHLGN GSDEPRTLYV GNLDSTVTED 60
61 FIATLFNQIG SVTKTKVIFD EMKVNWAVEP GQQQ
|
| Detection Method: |  |
| Confidence: | 3.44 |
| Match: | 1u6fA |
| Description: | NMR solution structure of TcUBP1, a single RBD-unit from Trypanosoma cruzi |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.2253781553459 | bayes_pls_golite062009 |
| nucleic acid binding | 0.266454831568309 | bayes_pls_golite062009 |
| RNA binding | 0.0143316548997158 | bayes_pls_golite062009 |
|
Region A: Residues: [95-314] |
1 11 21 31 41 51
| | | | | |
1 SKIDTTRHFH VFVGDLSSEV DNQKLREAFQ PFGDVSDAKV IRDTNTTKSK GYGFVSYPKR 60
61 EEAERAIEQM NGQWLGRRTI RTNWATRKPG DQEKPSHYNE KSYDEIYNQT SGDNTSVYVG 120
121 NIASLTEDEI RQGFASFGRI TEVRIFKMQG YAFVKFDNKD AAAKAIVQMN NQDVGGQLVR 180
181 CSWGKTGDTG KTPGGSYGYG YGNSSSGGNS QPYSGYGGGG
|
| Detection Method: | |
| Confidence: | 41.522879 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.38904784081546 | bayes_pls_golite062009 |
| nucleic acid binding | 0.535128751388028 | bayes_pls_golite062009 |
| RNA binding | 0.423111514770653 | bayes_pls_golite062009 |
|
Region A: Residues: [315-376] |
1 11 21 31 41 51
| | | | | |
1 AYGGGQGGGG HGGPGQQQSN ANSQYWQYYA QYYNNPQLMQ QWSNYWQQQG GAPQQQNSGG 60
61 HQ
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
