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Protein Overview: sys-1

General Information:
Name(s) found: sys-1 / CE27209 [WormBase]
Description(s) found:
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  • WBGene00006379 locus:sys-1 status:Confirmed UniProt:Q95ZN3 protein_id:CAC42344.1 [WormBase]
  • gi|17509209|ref|NP_492640.1| SYmmetrical Sister cell hermaphrodite gonad defect family member (sys-1) [Caenorhabditis elegans] [NCBI NR]
  • gi|14530569|emb|CAC42344.1| C. elegans protein T23D8.9b, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE27209 WBGene00006379 locus:sys-1 status:Partially_confirmed TR:Q95ZN3 protein_id:CAC42344.1 [wormpep150.fasta]
  • 27209 WBGene00011946 status:Partially_confirmed TR:Q95ZN3 protein_id:CAC42344.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • putative nuclear protein (1K556) [Caenorhabditis elegans]gi|14530569|emb|CAC42344.1| Hypothetical protein T23D8.9b [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • CE27209 WBGene00011946 status:Partially_confirmed TR:Q95ZN3 protein_id:CAC42344.1 [wormpep132.fasta]
  • 27209 WBGene00006379 locus:sys-1 status:Partially_confirmed TR:Q95ZN3 protein_id:CAC42344.1 [wormpep150-phg-orf-ecoli-rand.fasta]
  • status:Partially_confirmed TR:Q95ZN3 protein_id:CAC42344.1 [wormpep115.fasta.reversed]
  • CE27209 status:Predicted TR:Q95ZN3 protein_id:CAC42344.1 [wormpep80.hongbin]
  • CE27209 WBGene00006379 locus:sys-1 status:Confirmed UniProt:Q95ZN3_CAEEL protein_id:CAC42344.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE27209 WBGene00006379 locus:sys-1 status:Confirmed UniProt:Q95ZN3_CAEEL protein_id:CAC42344.1| [wormORF-contam.fasta]
  • SYmmetrical Sister cell hermaphrodite gonad defect family member (sys-1) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein T23D8.9b [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE27209 WBGene00006379 locus:sys-1 status:Confirmed UniProt:Q95ZN3 protein_id:CAC42344.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • Isoform of Q9XVI2, SYmmetrical Sister cell hermaphrodite gonad defect OS=Caenorhabditis elegans GN=sys-1 PE=4 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 239 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ICLink to PubMed article]
    Biological Process: polarity specification of proximal/distal axis [IGILink to PubMed article][IMPLink to PubMed article]
    hermaphrodite genitalia development [IMPLink to PubMed articleLink to PubMed article]
    male gonad development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    post-embryonic body morphogenesis [IMPLink to PubMed articleLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed articleLink to PubMed article]
    regulation of asymmetric cell division [IMPLink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    female gonad development [IMPLink to PubMed article]
    proximal/distal pattern formation [IMPLink to PubMed article]
    growth [IMPLink to PubMed article]
    locomotory behavior [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    morphogenesis of an epithelium [IMPLink to PubMed article]
    gastrulation with mouth forming first [IMPLink to PubMed article]
    Molecular Function: transcription coactivator activity [IDALink to PubMed article]
    transcription factor binding [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSTGEPQRG PAGPYHHPMP YHVDQIPTTS HPSWHQAPHP GLPTPPYHPQ QHPNYISMQP  60
   61 PPSQQQQMTP QALSTQQQQQ VQQQQQRQLY SSPSPSRGPA APAQNQKFRT EQWINNQAWP 120
  121 YSQSPAPPVA PSVMSYHQGD DRMSMLSVNT TMTNQFPDSQ RCYSSNGSTC ENVNPEMMQM 180
  181 NITQAAEQAI RFNFSYGLIH QIPCKDFIWQ KQYELGYDKI NLHKLIRQIC RTAYNKSLT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..239] MSA 1.002897 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle