Protein Overview: ttx-3

General Information:
Name(s) found:	ttx-3 / CE27107 [WormBase]
Description(s) found: SHOW ONLY BEST	WBGene00006654 locus:ttx-3 status:Confirmed UniProt:G5EE86 protein_id:CAB03956.3 [WormBase] gi\|2795770\|gb\|AAB97099.1\| putative transcription factor TTX-3 [Caenorhabditis elegans] [NCBI NR] gi\|17570147\|ref\|NP_509970.1\| abnormal ThermoTaXis family member (ttx-3) [Caenorhabditis elegans] [NCBI NR] gi\|13548319\|emb\|CAB03956.3\| C. elegans protein C40H5.5a, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR] LIM/homeobox protein ttx-3 OS=Caenorhabditis elegans GN=ttx-3 PE=1 SV=1 [Swiss-Prot] [wormpep67.fasta] CE27107 WBGene00006654 locus:ttx-3 LIM domain containing proteins (2 domains), homeobox protein (lim subfamily) status:Confirmed TR:Q94156 protein_id:CAB03956.3 [wormpep150.fasta] 27107 WBGene00006654 locus:ttx-3 LIM domain containing proteins (2 domains), homeobox protein (lim subfamily) status:Confirmed TR:Q94156 protein_id:CAB03956.3 [wormpep130-phg-ecoli-orf-rand.fasta] abnormal ThermoTaXis TTX-3, C.Elegans Homeobox, LIM (45.7 kD) (ttx-3) [Caenorhabditis elegans]gi\|13548319\|emb\|CAB03956.3\| Hypothetical protein C40H5.5 [Caenorhabditis elegans]gi\|2795770\|gb\|AAB97099.1\| putative transcription factor TTX-3 [Caenorhabditis [nrdb_11152004_Chlamydomonas] locus:ttx-3 LIM domain containing proteins (2 domains), homeobox protein (lim subfamily) status:Confirmed TR:Q94156 protein_id:CAB03956.3 [wormpep115.fasta.reversed] CE27107 locus:ttx-3 LIM domain containing proteins (2 domains), homeobox protein (lim subfamily) status:Confirmed TR:Q94156 protein_id:CAB03956.3 [wormpep80.hongbin] CE27107 WBGene00006654 locus:ttx-3 LIM domain containing proteins (2 domains), homeobox protein (lim subfamily) status:Confirmed UniProt:Q94156_CAEEL protein_id:CAB03956.3 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta] CE27107 WBGene00006654 locus:ttx-3 LIM domain containing proteins (2 domains), homeobox protein (lim subfamily) status:Confirmed UniProt:Q94156_CAEEL protein_id:CAB03956.3\| [wormORF-contam.fasta] Hypothetical protein C40H5.5 [Caenorhabditis elegans] [nr-271106-contam.fasta] putative transcription factor TTX-3 [Caenorhabditis elegans] [nr-271106-contam.fasta] abnormal ThermoTaXis family member (ttx-3) [Caenorhabditis elegans] [nr-271106-contam.fasta] CE27107 WBGene00006654 locus:ttx-3 LIM domain containing proteins (2 domains), homeobox protein (lim subfamily) status:Confirmed UniProt:Q94156 protein_id:CAB03956.3 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta] [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr] CE27107 WBGene00006654 locus:ttx-3 LIM domain containing proteins (2 domains), homeobox protein (lim subfamily) status:Confirmed UniProt:G5EE86 protein_id:CAB03956.3 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta] CE27107 WBGene00006654 locus:ttx-3 status:Confirmed UniProt:G5EE86 protein_id:CAB03956.3 [wormpep246-ecoli-contam.fasta] CE27107 WBGene00006654 locus:ttx-3 status:Confirmed UniProt:G5EE86 protein_id:CAB03956.3 LIM\/homeobox protein ttx-3 [c_elegans-PRJNA13758-WS250-ecoli-contam.fasta]
Organism:	Caenorhabditis elegans
Length:	409 amino acids
Gene Ontology:
Cellular Component:	nucleus [IEA][ISS]
Biological Process:	dauer larval development [IGI] positive regulation of gene-specific transcription [IMP] thermotaxis [IGI][IMP ] axonogenesis [IMP] thermosensory behavior [IGI][IMP ] regulation of transcription, DNA-dependent [IEA] olfactory learning [IMP] regulation of neuron differentiation [IMP] regulation of transcription [ISS]
Molecular Function:	transcription factor activity [IEA][ISS] zinc ion binding [IEA] sequence-specific DNA binding [IEA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYFQSLSADP LDSVNTTTDF NQLAQLLLML TNSSSKETIA THVVTNSVPS AFQFDWSSHF  60
   61 KEEYDLVEKL NSPQYTNLTS ISPSSSTDSN NLILRQIQIP KIEPALLNQC CLCTFAIVDK 120
  121 EISVVDGKYY HNNCLRCQMC DIPFEYSDKC YVRDGVFLCR ADHAKRYQKC CRKCEIPLNR 180
  181 EDMVMKAKEM IFHHACFVCF ICGIKLNPGD YYTMSPQGHL YCHAHYNAVR STVLCEEAAV 240
  241 ATVPAVVAPP PPPPTTTTAP PPAAPEQPPR EASTEAEAST DEDGNGSGSQ RSKRMRTSFK 300
  301 HHQLRAMKTY FALNHNPDAK DLKQLAAKTN LTKRVLQVWF QNARAKYRRE LHDGGRSSSP 360
  361 LCVSAPLASM DMNPPLSSSS SGHSTDGYQL NTPPLSSEIY SPNSNYTHL

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..180]	PSI-BLAST	17.522879	No description for 2dfyX was found.
2	View Details	[181..291]	FFAS03	2.94	No description for 2dfyX was found.
3	View Details	[292..409]	PSI-BLAST	10.522879	No description for 2dmqA was found.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.94

Protein Overview: ttx-3

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: