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Protein Overview: CE25812

General Information:
Name(s) found: CE25812 [WormBase]
Description(s) found:
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  • WBGene00016624 status:Confirmed UniProt:Q95QR6 protein_id:CCD61556.1 [WormBase]
  • gi|17532395|ref|NP_495412.1| hypothetical protein C44B7.2 [Caenorhabditis elegans] [NCBI NR]
  • gi|16259257|gb|AAL16321.1|U28928_5 Hypothetical protein C44B7.2b [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE25812 WBGene00016624 status:Confirmed TR:Q95QR6 protein_id:AAL16321.1 [wormpep150.fasta]
  • 25812 WBGene00016624 status:Confirmed TR:Q95QR6 protein_id:AAL16321.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • heterogeneous nuclear ribonucleoprotein L (2H191C) [Caenorhabditis elegans]gi|16259257|gb|AAL16321.1| Hypothetical protein C44B7.2b [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • status:Confirmed TR:Q95QR6 protein_id:AAL16321.1 [wormpep115.fasta.reversed]
  • CE25812 status:Partially_confirmed TR:Q95QR6 protein_id:AAL16321.1 [wormpep80.hongbin]
  • CE25812 WBGene00016624 status:Confirmed UniProt:Q95QR6_CAEEL protein_id:AAL16321.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE25812 WBGene00016624 status:Confirmed UniProt:Q95QR6_CAEEL protein_id:AAL16321.1| [wormORF-contam.fasta]
  • C44B7.2b [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein C44B7.2b [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE25812 WBGene00016624 status:Confirmed UniProt:Q95QR6 protein_id:AAL16321.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE25812 WBGene00016624 status:Confirmed UniProt:Q95QR6 protein_id:CCD61556.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • Isoform of Q95QR5, Uncharacterized protein OS=Caenorhabditis elegans GN=C44B7.2 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 339 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: mRNA processing [IEALink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    RNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGRGGYHHG FDGPKRYRRD DNADPTNPNP SIVVHVRNLH QKVTEADLLE ALSNFGPVAY  60
   61 ATCIPHSRMA LVEFEDIEGA KACVNFATSN QINVGGQGAL FNYSTSQCIE RMGFESATPN 120
  121 KVLVVTVLNA QYPIDADVIY QISNAQGKVL RVAVMHKPTV VQALVEFESM EVAKAAKHAM 180
  181 NGADIYSGCC TLKVEFAKPD RVRVQRQDKD QRDFTLPDNR RPYEDDRNHY DRHDYQAPSS 240
  241 YGYSSRGGGH SDYYGGDRGG PPHPPPSRYR DDYEDRGYAQ PAGGGPGCVM MIYGLEHGKI 300
  301 NCDMLFNILC QYGNVLRVSS SRVYYLHVYI LDQLHAHKN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..216] PSI-BLAST 33.522879 Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI)
    2 View Details [217..339] FFAS03 1.65 Solution structure of Polypyrimidine Tract Binding protein RBD34 complexed with CUCUCU RNA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.787118623292657 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.0269483316710413 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle