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Protein Overview: obr-1

General Information:
Name(s) found: obr-1 / CE24330 [WormBase]
Description(s) found:
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  • WBGene00012930 locus:obr-1 Oxysterol-binding protein status:Partially_confirmed UniProt:A7DTF3 protein_id:CAO82060.1 [WormBase]
  • pir||T31546 hypothetical protein Y47D3A.17 - Caenorhabditis elegans [NCBI NR]
  • gi|193210863|ref|NP_001122730.1| Oxysterol Binding protein (OSBP) Related family member (obr-1) [Caenorhabditis elegans] [NCBI NR]
  • gi|154147371|emb|CAO82060.1| C. elegans protein Y47D3A.17d, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • hypothetical protein Y47D3A.17 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • CE24330 WBGene00012930 locus:obr-1 status:Partially_confirmed UniProt:A7DTF3_CAEEL protein_id:CAO82060.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE24330 WBGene00012930 locus:obr-1 status:Partially_confirmed UniProt:A7DTF3_CAEEL protein_id:CAO82060.1| [wormORF-contam.fasta]
  • CE24330 WBGene00012930 locus:obr-1 status:Partially_confirmed [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE24330 WBGene00012930 locus:obr-1 status:Partially_confirmed UniProt:A7DTF3 protein_id:CAO82060.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • CE24330 WBGene00012930 locus:obr-1 status:Partially_confirmed UniProt:A7DTF3 protein_id:CAO82060.1 Oxysterol-binding protein [wormpep246-ecoli-contam.fasta]
  • Isoform of A7DTF2, Oxysterol-binding protein OS=Caenorhabditis elegans GN=obr-1 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 449 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    steroid metabolic process [IEALink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPCSNSNGPP ATAGVHLTPT KRHIGAGDPS SSTCSDSGAV VVVGAHKGGR QRRTTVPERP  60
   61 NLPINLWSIM KNCIGKELSK IPMPVNFSEP ISVLQRVTED LEYANLLETG AKLSTLEQMC 120
  121 YVAAYAASNY STTCHRTNKP FNPLLGETFE FDRMDDLGWR SVTEQVSHHP PAAAHHAEGN 180
  181 GWTMYQDFTM TSRFRGKYLS VIPIGFTHVV FPATKSHFSY RKITTTVHNI IVGKLWIDNH 240
  241 GDMEITNHET NEKCLLKFVP YSYFSREQPR KVYGIVRDAE GIPKYVVQGT WDKSIDMLKV 300
  301 SSWNGNHEKP KLEVDETSLK RIWTANPLPK NAEKMHNFTK LAIELNEPEE GVAPTDSRLR 360
  361 PDQRLMENGE WDEANRKKLE IEEKQRVVRR RREAEKELAM KKGDKYEEYE PTWFVRVQDE 420
  421 SNGALIHQFK GGYWEAKEQQ NWEKCPDIF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..449] PSI-BLAST 66.221849 Structure of yeast oxysterol binding protein Osh4 in complex with 7-hydroxycholesterol

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • sterol binding
    		•  3.12877992228795 bayes_pls_golite062009
  • steroid binding
    		•  2.54679035876403 bayes_pls_golite062009
  • binding
    		•  1.67154210149282 bayes_pls_golite062009
  • lipid binding
    		•  1.46539100663772 bayes_pls_golite062009
  • oxysterol binding
    		•  1.1738554488982 bayes_pls_golite062009
  • phospholipid binding
    		•  0.0867097353003303 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle