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Protein Overview: CE23238

General Information:
Name(s) found: CE23238 [WormBase]
Description(s) found:
Found 18 descriptions.
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  • WBGene00022464 status:Partially_confirmed UniProt:Q9N584 protein_id:CCD66212.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 660 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: nematode larval development [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed articleLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    growth [IMPLink to PubMed article]
    reproduction [IMPLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLGRVITRS LSSVEPALSQ KLTIQPAIER SPTDLLNALS ETVGPDTTAP HFAYIDDPIT  60
   61 IPSTQSTKKT YFMAKEFGKR AARELATEWP TLFAFDRDQP QLPVFRPRHL ADPLQVEPTE 120
  121 NNLLKMISSR EVKDSCILYE RMRSENVDVS EKVQLELFRL VTYYNSSNVP FAEWEEFVGM 180
  181 RNFGEDSTSS WKSGAVADLL FETLPKTDET VSIMIAGLCK FSDHSSLERA RELYKEHRAA 240
  241 KGKVYREAFN GLIGASSYSV GKKLVAEMIS LRMTPDIFTF NALLSSAAKA GKFEDRVKAF 300
  301 TEIIGEMKEI GVEPALSSFH LIIKNIIDFK LLDNEKRESD EQKKTYNHQL TVAISWLNEI 360
  361 QNSLTGKTLK PITSTCNLFF VEAMGIHYRA ANENLAENLV SIYESKANEV KMPAFTIESM 420
  421 FYNRQLQLAV EQSASLNRIY DLYTTMVPRL VGVNNYLSSL VFRKLAASSD RHWPLLRRVI 480
  481 IDGIAAGQMN GVIGEEMRKQ LCNVQLHTLG TSEREQFTSL VQKLVAVWVE FSQFTEERMR 540
  541 RLQRKLSPSQ ISECALLLTR IGEQQKAYEL LDLLLDETAS SGDEATVYPR GHARPWAMAE 600
  601 LFEDALRKRD TYAAATCLQI MSLTANRAKL EPLANRIFEK CNVNQEQVRI IQGFIRLRPQ 660
  661

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-2 hcp2 ip from december Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..409] PSI-BLAST 12.0 The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
    2 View Details [410..511] deduced N/A No confident structure predictions are available.
    3 View Details [512..660] MSA 3.731977 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.18163947675357 bayes_pls_golite062009
  • protein binding
    		•  0.80959862334949 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.85

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle