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Protein Overview: ubc-19

General Information:
Name(s) found: ubc-19 / CE22824 [WormBase]
Description(s) found:
Found 17 descriptions.
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  • WBGene00006714 locus:ubc-19 status:Confirmed UniProt:Q9U1U4 protein_id:CAB63403.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 292 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: protein modification process [IEALink to PubMed article]
    ubiquitin cycle [IEALink to PubMed article]
    Molecular Function: small conjugating protein ligase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEENQEKLEK SLKIPGNILK EQALAAEFVE VCRAPIDGIF VSPSANNKFL WFGVIFVRKG  60
   61 IFGGGIFRFN IHIPLEFPDA SDLPRVIFEQ SNLFHPLICT KSKELCLNRS FPEGWKKEKH 120
  121 SLRRVLVVLQ RSFYSYDVDT DKCINPEASV LYKEHRDKFR EIAKECVEAS RSMVYDELAE 180
  181 QEHDPNGIRL LPWDALTHKA AREKMLQIGD NSRFQGTAAD FRREHIFSKM GLQVSEIVGK 240
  241 SYPNSYSWFD PAEMTVITKY DDVDLSQVNP SDSARLDREK HGIEPLDLGN LN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..292] PSI-BLAST 31.0 The Structure of a Class II ubiquitin-conjugating enzyme, Ubc1.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.36134415541475 bayes_pls_golite062009
  • ligase activity
    		•  0.0718869348666398 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  0.0371971638467299 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  0.0334819228148397 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  0.0318206634586797 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.82

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle