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Protein Overview: npp-16

General Information:
Name(s) found: npp-16 / CE22584 [WormBase]
Description(s) found:
Found 16 descriptions.
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  • WBGene00003802 locus:npp-16 status:Partially_confirmed UniProt:Q9U240 protein_id:CAB60499.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 512 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: intracellular transport [IEALink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSLIPPPTS EQQMNMFRLR DKMSLLNAEF LKVINGYFTE KNHYDFSGTM KSYMDHVAQL  60
   61 KQIYKVDDDV AADMTVPRRT ENSSESSGET VAPRKIAKAV RKNGTPKNPL NSTVFAASSP 120
  121 AATVASVPKF GDISVITKET PAPLAKTAEP LVAPAAPATA RKRAIRGGGP LGGAESVVFK 180
  181 SGEDGQAATS SVKIPATTIK FPEPTKDFWT KKSDAPAAPS NSGSLFAFLG KELFSIKKNP 240
  241 PIYQNFSGDK PKETPKFSGF SFGKKPAEPS EEPKAADSTP KLTFGSPKEA DLPKPASSLF 300
  301 GASPSKPLVF GGSSADSTTS APKPFSALST AASLFGSSSA STTTTATQPL SFGSSSTGGS 360
  361 SLFSGFAGLA QKAMENQNQA KPEGSGEDDE GEYVPPKVET VENQEPDAVL SSKVSVFKFT 420
  421 GKEYTKLGVG MLHIKDNDGK FSVLIRAATA TGTVWLNSLC NKAMKATVVD AKGDRIRLTC 480
  481 PSSSTEMATM MIRFGTADGA KKFTDKILEV AV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..212] MSA 5.199995 View MSA. No confident structure predictions are available.
    2 View Details [213..374] MSA 3.198987 View MSA. No confident structure predictions are available.
    3 View Details [375..512] PSI-BLAST 45.69897 Nuclear pore complex protein Nup358

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  0.597587183571285 bayes_pls_golite062009
  • protein binding
    		•  0.29116370406325 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle