| Protein: | npp-16 |
| Organism: | Caenorhabditis elegans |
| Length: | 512 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for npp-16.
| Description | E-value | Query Range |
Subject Range |
|
|
250.0 | [0..74] | [510..835] |
|
Region A: Residues: [1-212] |
1 11 21 31 41 51
| | | | | |
1 MNSLIPPPTS EQQMNMFRLR DKMSLLNAEF LKVINGYFTE KNHYDFSGTM KSYMDHVAQL 60
61 KQIYKVDDDV AADMTVPRRT ENSSESSGET VAPRKIAKAV RKNGTPKNPL NSTVFAASSP 120
121 AATVASVPKF GDISVITKET PAPLAKTAEP LVAPAAPATA RKRAIRGGGP LGGAESVVFK 180
181 SGEDGQAATS SVKIPATTIK FPEPTKDFWT KK
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [213-374] |
1 11 21 31 41 51
| | | | | |
1 SDAPAAPSNS GSLFAFLGKE LFSIKKNPPI YQNFSGDKPK ETPKFSGFSF GKKPAEPSEE 60
61 PKAADSTPKL TFGSPKEADL PKPASSLFGA SPSKPLVFGG SSADSTTSAP KPFSALSTAA 120
121 SLFGSSSAST TTTATQPLSF GSSSTGGSSL FSGFAGLAQK AM
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [375-512] |
1 11 21 31 41 51
| | | | | |
1 ENQNQAKPEG SGEDDEGEYV PPKVETVENQ EPDAVLSSKV SVFKFTGKEY TKLGVGMLHI 60
61 KDNDGKFSVL IRAATATGTV WLNSLCNKAM KATVVDAKGD RIRLTCPSSS TEMATMMIRF 120
121 GTADGAKKFT DKILEVAV
|
| Detection Method: | |
| Confidence: | 45.69897 |
| Match: | 1rrpB |
| Description: | Nuclear pore complex protein Nup358 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.597587183571285 | bayes_pls_golite062009 |
| protein binding | 0.29116370406325 | bayes_pls_golite062009 |
