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Protein Overview: CE22408

General Information:
Name(s) found: CE22408 [WormBase]
Description(s) found:
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  • WBGene00013164 status:Partially_confirmed UniProt:Q9NAB7 protein_id:CAB61089.1 [WormBase]
  • gi|6434539|emb|CAB61089.1| C. elegans protein Y53F4B.18, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17537465|ref|NP_497103.1| hypothetical protein Y53F4B.18 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE22408 WBGene00013164 status:Partially_confirmed TR:Q9NAB7 protein_id:CAB61089.1 [wormpep150.fasta]
  • 22408 WBGene00013164 status:Partially_confirmed TR:Q9NAB7 protein_id:CAB61089.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • amidase (2P346) [Caenorhabditis elegans]gi|6434539|emb|CAB61089.1| Hypothetical protein Y53F4B.18 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • status:Partially_confirmed TR:Q9NAB7 protein_id:CAB61089.1 [wormpep115.fasta.reversed]
  • CE22408 status:Predicted TR:Q9NAB7 protein_id:CAB61089.1 [wormpep80.hongbin]
  • CE22408 WBGene00013164 status:Partially_confirmed UniProt:Q9NAB7_CAEEL protein_id:CAB61089.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE22408 WBGene00013164 status:Partially_confirmed UniProt:Q9NAB7_CAEEL protein_id:CAB61089.1| [wormORF-contam.fasta]
  • Y53F4B.18 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein Y53F4B.18 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE22408 WBGene00013164 status:Partially_confirmed UniProt:Q9NAB7 protein_id:CAB61089.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • Uncharacterized protein OS=Caenorhabditis elegans GN=CELE_Y53F4B.18 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 535 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [IEALink to PubMed article]
    Biological Process: translation [IEALink to PubMed article]
    Molecular Function: amidase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVPYRLKKA FLNLLLTISA AYFYTIRFVF WLVNTFFRER VYVTPPTDRL LLISATQAVQ  60
   61 MISQKEISST ALVESYIHRI EQVNNTINAV VVKLFESARE QANEVDSFIA LADEDDIKKK 120
  121 LEEKPLYGVP FTMKDALEVE NEIITCGVFN RKSTKCDRTA EAIKRLQAAG GILLAITNVP 180
  181 EVCMWVESVN TIYGRSKNPY DARRMTGGSS GGEGALLGSG GSVIGVGSDI GGSIRMPAFF 240
  241 NGVFGLKPTP GVIPLIGHVP EPTGYKTHML RIGPMCRFAE DLPLMLRIMA GENAQSLNLH 300
  301 EPVSGKKLRV FYMEGITGSP IIQPLEDEMR YALKKAVRFL ERKYDIVAQG IELPSAKHAM 360
  361 EFFTLSMHED TTDPAFNKLM LCTKGTKGEV NCFTEIFKYM AGNSNHTLSG IVAGIIDSRD 420
  421 PPFSEAHTKN LLYKRDRLKR QVKELLGTDG ILLFPSWPCT AMYHNEPILA PFNFCYTALW 480
  481 NVLSVPVVQC PLGLDSRGLP LGVQVIGNQY TDRNLIAIAQ VLEEGFNGWT PAGPL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..535] PSI-BLAST 130.0 No description for 2df4A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity
    		•  3.16753436373904 bayes_pls_golite062009
  • glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
    		•  1.35558934074841 bayes_pls_golite062009
  • catalytic activity
    		•  0.906509857495572 bayes_pls_golite062009
  • binding
    		•  0.644139061567672 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
    		•  0.301483171038292 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle