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Protein Overview: pvf-1

General Information:
Name(s) found: pvf-1 / CE21657 [WormBase]
Description(s) found:
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  • WBGene00004249 locus:pvf-1 status:Confirmed UniProt:Q9N413 protein_id:CCD73778.1 [WormBase]
  • gi|7331829|gb|AAF60517.1| Pdgf/vegf growth factor related protein 1 [Caenorhabditis elegans] [NCBI NR]
  • gi|17555774|ref|NP_497461.1| PDGF/VEGF growth factor related family member (pvf-1) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE21657 WBGene00004249 locus:pvf-1 status:Partially_confirmed TR:Q9N413 protein_id:AAF60517.1 [wormpep150.fasta]
  • 21657 WBGene00004249 locus:pvf-1 status:Partially_confirmed TR:Q9N413 protein_id:AAF60517.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • platelet-derived growth factor precursor (34.1 kD) (3C912) [Caenorhabditis elegans]gi|7331829|gb|AAF60517.1| Pdgf/vegf growth factor related protein 1 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • status:Partially_confirmed TR:Q9N413 protein_id:AAF60517.1 [wormpep115.fasta.reversed]
  • CE21657 status:Partially_confirmed TR:Q9N413 protein_id:AAF60517.1 [wormpep80.hongbin]
  • CE21657 WBGene00004249 locus:pvf-1 status:Partially_confirmed UniProt:Q9N413_CAEEL protein_id:AAF60517.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE21657 WBGene00004249 locus:pvf-1 status:Partially_confirmed UniProt:Q9N413_CAEEL protein_id:AAF60517.1| [wormORF-contam.fasta]
  • Pdgf/vegf growth factor related protein 1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • PDGF/VEGF growth factor related family member (pvf-1) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE21657 WBGene00004249 locus:pvf-1 status:Confirmed UniProt:Q9N413 protein_id:AAF60517.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE21657 WBGene00004249 locus:pvf-1 status:Confirmed UniProt:Q9N413 protein_id:CCD73778.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • PDGF/VEGF growth factor related OS=Caenorhabditis elegans GN=pvf-1 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 304 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEALink to PubMed article]
    Biological Process: NONE FOUND
    Molecular Function: growth factor activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNPMILLIF CLFCAVICSR GTDSDIPHEF HKMLKHAKSL NSLLRDLHVI YSPEMTNRHV  60
   61 EKTDKHGAAL SLKSGSMSAQ RIVSIQNISD DEMDGYTLFH LQSMKDIKQG NDTCNLQSVC 120
  121 VPIPQLSDDP QVLMYPKCYE VKQCVGSCCN SVETCHPGTI NLVKKHVAEL LYIGNGRFMF 180
  181 NMTKEITMEE HTSCSCFDCG SNTPQCAPGF VVGRSCTCEC ANKEERNNCV GNATWNAETC 240
  241 KCECDLKCEE GKILHKDRCD CVRRRQHHGG PRGHHGHRHH HRSRPIDTEE VQKIGQLKVG 300
  301 RIGG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..86] MSA 2.040996 View MSA. No confident structure predictions are available.
    2 View Details [87..200] PSI-BLAST 22.69897 Placenta growth factor-1, PLGF-1
    3 View Details [201..304] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.587687438033265 bayes_pls_golite062009
  • protein binding
    		•  0.53742562922963 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle