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Protein Overview: CE21464

General Information:
Name(s) found: CE21464 [WormBase]
Description(s) found:
Found 16 descriptions.
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  • WBGene00021281 locus:ell-1 status:Confirmed UniProt:Q9N554 protein_id:CCD71895.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 670 amino acids

    Gene Ontology:
    Cellular Component: transcription elongation factor complex [IEALink to PubMed article]
    Biological Process: RNA elongation from RNA polymerase II promoter [IEALink to PubMed article]
    Molecular Function: RNA polymerase II transcription elongation factor activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHHFSTGSSS AIIASSSSSS SSSNGYGHSP RDLLTGAAVA NGGGGGFGGV AGVAFATTSP  60
   61 PTPVNLDVQR IDCTDETTVV MVKLTDEMFA ALQESQRSGK PLRINVNDKE GRVEIGDGTA 120
  121 SSKTNNTFYF QKQTVPEQTD TLVHSGGGVR NVGTYKTKYQ IQATDRSFQE TKKRAELRAE 180
  181 VEKSRGTKQM KKSGVTSSSS RYHNSSNSTP RSMNSAPNSS RVSPSFMSSS SSKASTSHVT 240
  241 TNNSKGTPNN GSESKKIDMT PQLMKHSIKK RIIHLIVTQK YSNWEEVYKK LKSDGLPEEK 300
  301 DEIEKIRSCV EEVSETRPEM SVMSLRTSFL SEVDQRWMFF NQEEKSHVRR LCNSGSRVGP 360
  361 TDNNFAPLRK KGMERITASS KTEKDKVKEK LEEAAKIPSP PKDQKSLPSI VEEDDYYTAP 420
  421 PEPANKRRAH NLAPPPPPPV QVVTPQTTSS QTETGPLPPK RTKRPESSSP QLERSSQPAS 480
  481 KLNPIKLAAT IAMQPIPKCD PPPPPPSRDT YHHNVASVAV NGGGSTASSR VSSPASSLSS 540
  541 PSQPSCNWEK QFGDIKTLSE AEAYFKQFHK EYPLYMECHE MLTKVSSEFR GLEVKLLTAV 600
  601 ALSKTSPSPQ NMQNVKQIEK NIQNRYAHFE KDPEFMKARQ RHTDLRSKLN VLKTRIGSWE 660
  661 KMRRQSSTNV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..201] deduced N/A No confident structure predictions are available.
    2 View Details [202..399] PSI-BLAST 12.69897 No description for 2doaA was found.
    3 View Details [400..556] FFAS03 1.38 No description for 2j63A was found.
    4 View Details [557..670] PSI-BLAST 30.39794 1.5 Angstrom crystal structure of human occludin fragment 413-522

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.835523092977445 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.4843036104266 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.37117756729668 bayes_pls_golite062009
  • DNA binding
    		•  0.3118855114645 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle