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Protein Overview: CE20620

General Information:
Name(s) found: CE20620 [WormBase]
Description(s) found:
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  • WBGene00017025 status:Confirmed UniProt:Q9TYS1 protein_id:CCD68348.1 [WormBase]
  • pir||T33856 hypothetical protein D1037.1 - Caenorhabditis elegans [NCBI NR]
  • gi|17506341|ref|NP_491200.1| hypothetical protein D1037.1 [Caenorhabditis elegans] [NCBI NR]
  • gi|13384432|gb|AAK21366.1| Hypothetical protein D1037.1 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE20620 WBGene00017025 status:Partially_confirmed TR:Q9TYS1 protein_id:AAK21366.1 [wormpep150.fasta]
  • 20620 WBGene00017025 status:Partially_confirmed TR:Q9TYS1 protein_id:AAK21366.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • son protein (89.7 kD) (1E257) [Caenorhabditis elegans]gi|13384432|gb|AAK21366.1| Hypothetical protein D1037.1 [Caenorhabditis elegans]gi|7498101|pir||T33856 hypothetical protein D1037.1 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • status:Partially_confirmed TR:Q9TYS1 protein_id:AAK21366.1 [wormpep115.fasta.reversed]
  • CE20620 status:Partially_confirmed TR:Q9TYS1 protein_id:AAK21366.1 [wormpep80.hongbin]
  • CE20620 WBGene00017025 status:Partially_confirmed UniProt:Q9TYS1_CAEEL protein_id:AAK21366.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE20620 WBGene00017025 status:Partially_confirmed UniProt:Q9TYS1_CAEEL protein_id:AAK21366.1| [wormORF-contam.fasta]
  • D1037.1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein D1037.1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE20620 WBGene00017025 status:Partially_confirmed UniProt:Q9TYS1 protein_id:AAK21366.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE20620 WBGene00017025 status:Confirmed UniProt:Q9TYS1 protein_id:CCD68348.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • Uncharacterized protein OS=Caenorhabditis elegans GN=CELE_D1037.1 PE=4 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 786 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEALink to PubMed article]
    Biological Process: NONE FOUND
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    double-stranded RNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDGEGITPK TCSEDIIKDL LNDVKSSEKP FSVDKLAGCD QTDFVGKRPK KHHRHKSKKS  60
   61 KKVRRRSKTW SSSRSRSRSR SRSRGRSQER RRSRKSRKSR SRSRLKHREE KIEKKNLEKA 120
  121 PKNELIPQAP STENGKPKEF KEPPRKDEAD DLPLGADFST PLVKKETKLA ISITTVLPKA 180
  181 ENKKEVEDGE IEEIAYGDGD FKEPEGIEKN LENKNICENG NLDNSENEKS KEKDKNRKKE 240
  241 KTERKRKRSH SSSDRRGRRT SKESRRRSRS RDTHRTRRRS PERSRRSTET RNERPERPSR 300
  301 WRSRSRERKE YDSYRRRRSR SREVIDKEKL LAIAKTKRAE MMSNGDRDSA SIEDFVTYCK 360
  361 KLQRRQEREK RREAGHDVSD HDSDRETVRY KHPYAMPKEP IRINIVTATS ANLAQKAITG 420
  421 PEEPTQLGAA QLRIVFPVSS GAVHKENAEW VPVEKEDVPK SCSVEQKKHV ALTSLEIDRC 480
  481 RAQGIPVAPA PVPKFLNSIL PPPPAPPQFL PNPTDSFRPP TPPPLPSVLY VPNKDQMILK 540
  541 EPKDIPIPAP SDIGKVLKQR TEAQRKVLST PNDFDAHRAL REANEQISLW AALKSLPGEY 600
  601 TGTTGLRLLT ADELQPQNPK YHAWVKKDQF RNAAPATGGI GRLMLEKMGW RPGEGLGKDA 660
  661 TGNLEPLMLD VKSDRKGLIA EEEMSIKQRN KINAQNNVPV DLSNKNPISL IMELCAKRRW 720
  721 NPPSFSCEES GADHLKMFVW TIVINDVEYR PMCGSKQKKE GKAVAAQVAL QSLGVLPMDP 780
  781 NLPVYM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..374] PSI-BLAST 10.154902 Heavy meromyosin subfragment
    2 View Details [375..517] deduced N/A No confident structure predictions are available.
    3 View Details [518..603] MSA 1.189995 View MSA. No confident structure predictions are available.
    4 View Details [604..786] PSI-BLAST 4.30103 RNase III endonuclease catalytic domain; RNase III, C-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  0.602312874472495 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle