| Protein: | CE20620 |
| Organism: | Caenorhabditis elegans |
| Length: | 786 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE20620.
| Description | E-value | Query Range |
Subject Range |
|
|
323.0 | [0..375] | [778..49] |
|
Region A: Residues: [1-374] |
1 11 21 31 41 51
| | | | | |
1 MVDGEGITPK TCSEDIIKDL LNDVKSSEKP FSVDKLAGCD QTDFVGKRPK KHHRHKSKKS 60
61 KKVRRRSKTW SSSRSRSRSR SRSRGRSQER RRSRKSRKSR SRSRLKHREE KIEKKNLEKA 120
121 PKNELIPQAP STENGKPKEF KEPPRKDEAD DLPLGADFST PLVKKETKLA ISITTVLPKA 180
181 ENKKEVEDGE IEEIAYGDGD FKEPEGIEKN LENKNICENG NLDNSENEKS KEKDKNRKKE 240
241 KTERKRKRSH SSSDRRGRRT SKESRRRSRS RDTHRTRRRS PERSRRSTET RNERPERPSR 300
301 WRSRSRERKE YDSYRRRRSR SREVIDKEKL LAIAKTKRAE MMSNGDRDSA SIEDFVTYCK 360
361 KLQRRQEREK RREA
|
| Detection Method: |  |
| Confidence: | 10.154902 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [375-517] |
1 11 21 31 41 51
| | | | | |
1 GHDVSDHDSD RETVRYKHPY AMPKEPIRIN IVTATSANLA QKAITGPEEP TQLGAAQLRI 60
61 VFPVSSGAVH KENAEWVPVE KEDVPKSCSV EQKKHVALTS LEIDRCRAQG IPVAPAPVPK 120
121 FLNSILPPPP APPQFLPNPT DSF
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [518-603] |
1 11 21 31 41 51
| | | | | |
1 RPPTPPPLPS VLYVPNKDQM ILKEPKDIPI PAPSDIGKVL KQRTEAQRKV LSTPNDFDAH 60
61 RALREANEQI SLWAALKSLP GEYTGT
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [604-786] |
1 11 21 31 41 51
| | | | | |
1 TGLRLLTADE LQPQNPKYHA WVKKDQFRNA APATGGIGRL MLEKMGWRPG EGLGKDATGN 60
61 LEPLMLDVKS DRKGLIAEEE MSIKQRNKIN AQNNVPVDLS NKNPISLIME LCAKRRWNPP 120
121 SFSCEESGAD HLKMFVWTIV INDVEYRPMC GSKQKKEGKA VAAQVALQSL GVLPMDPNLP 180
181 VYM
|
| Detection Method: | |
| Confidence: | 4.30103 |
| Match: | 1o0wA |
| Description: | RNase III endonuclease catalytic domain; RNase III, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.602312874472495 | bayes_pls_golite062009 |
