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Protein Overview: CE20317

General Information:
Name(s) found: CE20317 [WormBase]
Description(s) found:
Found 18 descriptions.
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  • WBGene00013201 status:Partially_confirmed UniProt:Q9XWJ9 protein_id:CAA21662.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 436 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEALink to PubMed article]
    Biological Process: tRNA processing [IEALink to PubMed article]
    Molecular Function: double-stranded RNA binding [IEALink to PubMed article]
    oxidoreductase activity [IEALink to PubMed article]
    FAD binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLYRNKKI LAPMVRAGRT PLRLLCLKYG ADLCYTEEIV DKKLIEATRV VNEALGTIDY  60
   61 RNGDDIILRL APEEKGRCIL QIGTNSGEKA AKIAQIVGDD VAGIDVNMGC PKPFSIHCGM 120
  121 GAALLTQTEK IVDILTSLKS AAKVPVTCKI RVLDDPEDTL KLVQEIEKCR VSALGVHGRR 180
  181 RDERQPDKCR IDEIRDVAQA VQSIPVISNG LSDEIEQYSD FEKYQLLTET SSTMIARKAL 240
  241 STPSIFRREG CLDKYEDIRN FLELACQYDE SYTMTKYVVQ RILGADQEYD PRGKATVAAG 300
  301 SVLQICKAFG MEDVYDKWRD ERKKKQSKKR ARVDDDGVYN IEVSFPLKRL KNSVGFSPTP 360
  361 KMVLHDYCVE TKIPKATYEV VKRDDKRFVA TACIGDKKYR SGIGQPNLRM AEQVAALAAL 420
  421 HGMNIRNLLV GNWEEE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..329] PSI-BLAST 52.522879 Crystal structure of a putative flavin oxidoreductase with flavin
    2 View Details [330..436] PSI-BLAST 19.221849 Solution structure of the dsRBD from hypothetical protein BAB26260

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.94749091175302 bayes_pls_golite062009
  • tRNA dihydrouridine synthase activity
    		•  1.94490879164338 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-CH group of donors
    		•  0.876786102965635 bayes_pls_golite062009
  • oxidoreductase activity
    		•  0.80115790656025 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.453918901387506 bayes_pls_golite062009
  • binding
    		•  0.256396206082349 bayes_pls_golite062009
    2
    Term Confidence Notes
  • RNA binding
    		•  2.98626823365065 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.37060700736029 bayes_pls_golite062009
  • binding
    		•  2.27335967900422 bayes_pls_golite062009
  • double-stranded RNA binding
    		•  1.46317494664076 bayes_pls_golite062009
  • protein binding
    		•  1.18355143131643 bayes_pls_golite062009
  • DNA binding
    		•  0.920522581712875 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.661231648959158 bayes_pls_golite062009
  • double-stranded RNA adenosine deaminase activity
    		•  0.302022923474064 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.248030722334756 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle