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Protein Overview: CE20267

General Information:
Name(s) found: CE20267 [WormBase]
Description(s) found:
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  • WBGene00012950 status:Confirmed UniProt:Q9XWD5 protein_id:CAA21740.1 [WormBase]
  • pir||T26973 hypothetical protein Y47H9C.7 - Caenorhabditis elegans [NCBI NR]
  • gi|3881081|emb|CAA21740.1| C. elegans protein Y47H9C.7, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17510061|ref|NP_493014.1| hypothetical protein Y47H9C.7 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE20267 WBGene00012950 Initiation factor 2 subunit status:Confirmed TR:Q9XWD5 protein_id:CAA21740.1 [wormpep150.fasta]
  • 20267 WBGene00012950 Initiation factor 2 subunit status:Confirmed TR:Q9XWD5 protein_id:CAA21740.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • translation initiation factor 2B (38.1 kD) (1M484) [Caenorhabditis elegans]gi|3881081|emb|CAA21740.1| Hypothetical protein Y47H9C.7 [Caenorhabditis elegans]gi|7509949|pir||T26973 hypothetical protein Y47H9C.7 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • Initiation factor 2 subunit status:Partially_confirmed TR:Q9XWD5 protein_id:CAA21740.1 [wormpep115.fasta.reversed]
  • CE20267 Initiation factor 2 subunit status:Partially_confirmed TR:Q9XWD5 protein_id:CAA21740.1 [wormpep80.hongbin]
  • CE20267 WBGene00012950 Initiation factor 2 subunit status:Confirmed UniProt:Q9XWD5_CAEEL protein_id:CAA21740.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE20267 WBGene00012950 Initiation factor 2 subunit status:Confirmed UniProt:Q9XWD5_CAEEL protein_id:CAA21740.1| [wormORF-contam.fasta]
  • Y47H9C.7 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein Y47H9C.7 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE20267 WBGene00012950 Initiation factor 2 subunit status:Confirmed UniProt:Q9XWD5 protein_id:CAA21740.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • CE20267 WBGene00012950 status:Confirmed UniProt:Q9XWD5 protein_id:CAA21740.1 [wormpep246-ecoli-contam.fasta]
  • Uncharacterized protein OS=Caenorhabditis elegans GN=CELE_Y47H9C.7 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 340 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: nematode larval development [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed article]
    cellular biosynthetic process [IEALink to PubMed article]
    cellular metabolic process [IEALink to PubMed article]
    growth [IMPLink to PubMed article]
    positive regulation of multicellular organism growth [IMPLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDNEIEDL KRAFIFALRK KFPRDSSSSI AIATVNLIRK IIFRENPKTM NDLQVSLANH  60
   61 CKKLHGAERS ELIIINIGLM ITKLARDEVL QKKGGGEPEP LYTLWRDDDE TIKKLKTADM 120
  121 KKIKKDLQAS IKELVTEIES SRECIASQST ELLFNNDVVL VHSLRSSQTM HNFLSHAVKS 180
  181 GRKHRVIDVV DEEEHIESTP DFATAIELYE VASKMPEASK VVLVAAAYFP DGSCLVPAGG 240
  241 HQIALLAKRH CVPVYVLAPF YKLCPFFMTN PDSLHTFRSN SLPFDLSAKS AGLVDCLHPA 300
  301 FDCLQSDLVT LFVSNTSCVI PSHVNRLKED YYHSQDIADY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..340] PSI-BLAST 85.0 X-ray crystal structure of aIF-2B alpha subunit-related translation initiation factor [Thermotoga maritima]

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • translation initiation factor activity
    		•  10.1099993541596 bayes_pls_golite062009
  • translation regulator activity
    		•  5.74669335554405 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.17718456512191 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.9283980201455 bayes_pls_golite062009
  • DNA binding
    		•  1.55389679363348 bayes_pls_golite062009
  • binding
    		•  1.53908996868286 bayes_pls_golite062009
  • catalytic activity
    		•  1.31732715713197 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  1.09424756417577 bayes_pls_golite062009
  • transcription factor activity
    		•  0.995059566132783 bayes_pls_golite062009
  • protein binding
    		•  0.0293610121675921 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle