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Protein Overview: smp-1

General Information:
Name(s) found: smp-1 / CE19225 [WormBase]
Description(s) found:
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  • WBGene00004889 locus:smp-1 Semaphorin-1A status:Confirmed UniProt:Q17330 protein_id:CAA21714.1 [WormBase]
  • gi|8134675|sp|Q17330.2|SEM1A_CAEEL RecName: Full=Semaphorin-1A; AltName: Full=CeSema; Flags: Precursor [NCBI NR]
  • pir||T27165 hypothetical protein Y54E5B.1 - Caenorhabditis elegans [NCBI NR]
  • gi|71995633|ref|NP_493582.3| SeMaPhorin related family member (smp-1) [Caenorhabditis elegans] [NCBI NR]
  • gi|3881120|emb|CAA21714.1| C. elegans protein Y54E5B.1a, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • (Q17330) Semaphorin 1A precursor (CeSema) [Swiss-Prot]
  • Semaphorin-1A OS=Caenorhabditis elegans GN=smp-1 PE=2 SV=2 [Swiss-Prot]
  • [wormpep67.fasta]
  • Hypothetical protein Y54E5B.1a [Caenorhabditis elegans]gi|7510193|pir||T27165 hypothetical protein Y54E5B.1 - Caenorhabditis elegansgi|8134675|sp|Q17330|SM1A_CAEEL Semaphorin 1A precursor (CeSema) [nrdb_11152004_Chlamydomonas]
  • CE19225 WBGene00004889 locus:smp-1 status:Partially_confirmed SW:Q17330 protein_id:CAA21714.1 [wormpep150.fasta]
  • 19225 WBGene00004889 locus:smp-1 status:Partially_confirmed SW:Q17330 protein_id:CAA21714.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • locus:smp-1 status:Partially_confirmed SW:Q17330 protein_id:CAA21714.1 [wormpep115.fasta.reversed]
  • CE19225 status:Partially_confirmed SW:Q17330 protein_id:CAA21714.1 [wormpep80.hongbin]
  • CE19225 WBGene00004889 locus:smp-1 status:Partially_confirmed UniProt:SEM1A_CAEEL protein_id:CAA21714.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE19225 WBGene00004889 locus:smp-1 status:Partially_confirmed UniProt:SEM1A_CAEEL protein_id:CAA21714.1| [wormORF-contam.fasta]
  • Hypothetical protein Y54E5B.1a [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • SeMaPhorin related family member (smp-1) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Semaphorin-1A precursor (CeSema) [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE19225 WBGene00004889 locus:smp-1 status:Partially_confirmed UniProt:Q17330 protein_id:CAA21714.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • CE19225 WBGene00004889 locus:smp-1 status:Confirmed UniProt:Q17330 protein_id:CAA21714.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE19225 WBGene00004889 locus:smp-1 status:Confirmed UniProt:Q17330 protein_id:CAA21714.1 Semaphorin-1A [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 712 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEALink to PubMed article]
    Biological Process: multicellular organismal development [IEALink to PubMed article]
    Molecular Function: receptor activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRILTLLLL FNVVRSSEAI TGGVVNLRPK QIINSVGIGD RFGGIGTSSD ESDHFKLLAA  60
   61 DGDSLLVGAR NAVYNLSLST LSVNHKIDWK PPAEHIEECI MKGKSKTDCQ NYIRVLARKS 120
  121 AGVSLVCGTH AFSPKCREYT VTEFGIRNTR QFDGQGISPY DPKHNSSALY VPGTNQLFVA 180
  181 TVTDFVGNDA LIYRKTIDET PSSKSAANIR TQSYDARVLN APNFVATFAY KEHVYFWFRE 240
  241 IASEAIDNNE EPQIYARVAR VCKNDKGGAR PANERWTSYL KARLNCSLPS GSSPFYFNEL 300
  301 KAVSDPIDAG NNNHVVYTVF STPDSDVRMS AVCKFSMKKI REEFDNGTFK HQNNAQSMWM 360
  361 AFNRNEVPKP RPGSCSPDST KLPENTVSFI LHHPLLHRPI PSVAAPLLVE GADRADLTQI 420
  421 TVLPRVRAVG GHNYDILFIG TSDGKVLKVV EVDGNATVIQ SATVFQRGVP IVNLLTTKES 480
  481 VVIVSADEIA SLPVHNCAQQ TSCSKCVQLQ DPHCAWDSSI ARCVHGGSWT GDQFIQNMVF 540
  541 GQSEQCPEGI IVREVFDDNE SEAQPEAVSR SGYPKEHSTI TVVLVAAVAS LISLIIGAFI 600
  601 GIRVNRWAAT SEPHRSASST SGSDYDSFGR ARLTRHDSLT TATKVDHGFV PQSKQSVDAT 660
  661 SLVMSINATH HPMSMSQHGS GINTPSRDKN AIVTSINQNT LPRDYKVKKV YL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..610] PSI-BLAST 120.0 The ligand-binding face of the semaphorins revealed by the high resolution crystal structure of SEMA4D
    2 View Details [611..712] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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