| Protein: | smp-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 712 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for smp-1.
| Description | E-value | Query Range |
Subject Range |
|
|
565.0 | [0..15] | [712..14] |
|
Region A: Residues: [1-610] |
1 11 21 31 41 51
| | | | | |
1 MRRILTLLLL FNVVRSSEAI TGGVVNLRPK QIINSVGIGD RFGGIGTSSD ESDHFKLLAA 60
61 DGDSLLVGAR NAVYNLSLST LSVNHKIDWK PPAEHIEECI MKGKSKTDCQ NYIRVLARKS 120
121 AGVSLVCGTH AFSPKCREYT VTEFGIRNTR QFDGQGISPY DPKHNSSALY VPGTNQLFVA 180
181 TVTDFVGNDA LIYRKTIDET PSSKSAANIR TQSYDARVLN APNFVATFAY KEHVYFWFRE 240
241 IASEAIDNNE EPQIYARVAR VCKNDKGGAR PANERWTSYL KARLNCSLPS GSSPFYFNEL 300
301 KAVSDPIDAG NNNHVVYTVF STPDSDVRMS AVCKFSMKKI REEFDNGTFK HQNNAQSMWM 360
361 AFNRNEVPKP RPGSCSPDST KLPENTVSFI LHHPLLHRPI PSVAAPLLVE GADRADLTQI 420
421 TVLPRVRAVG GHNYDILFIG TSDGKVLKVV EVDGNATVIQ SATVFQRGVP IVNLLTTKES 480
481 VVIVSADEIA SLPVHNCAQQ TSCSKCVQLQ DPHCAWDSSI ARCVHGGSWT GDQFIQNMVF 540
541 GQSEQCPEGI IVREVFDDNE SEAQPEAVSR SGYPKEHSTI TVVLVAAVAS LISLIIGAFI 600
601 GIRVNRWAAT
|
| Detection Method: |  |
| Confidence: | 120.0 |
| Match: | 1olzA |
| Description: | The ligand-binding face of the semaphorins revealed by the high resolution crystal structure of SEMA4D |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [611-712] |
1 11 21 31 41 51
| | | | | |
1 SEPHRSASST SGSDYDSFGR ARLTRHDSLT TATKVDHGFV PQSKQSVDAT SLVMSINATH 60
61 HPMSMSQHGS GINTPSRDKN AIVTSINQNT LPRDYKVKKV YL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
