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Protein Overview: mdt-29

General Information:
Name(s) found: mdt-29 / CE18874 [WormBase]
Description(s) found:
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  • WBGene00007025 locus:mdt-29 Mediator of RNA polymerase II transcription subunit 29 status:Confirmed UniProt:Q9XUS2 protein_id:CAB04600.1 [WormBase]
  • pir||T23461 hypothetical protein K08E3.8 - Caenorhabditis elegans [NCBI NR]
  • gi|75028446|sp|Q9XUS2.1|MED29_CAEEL RecName: Full=Mediator of RNA polymerase II transcription subunit 29; AltName: Full=Mediator complex subunit 29 [NCBI NR]
  • gi|3878446|emb|CAB04600.1| C. elegans protein K08E3.8, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17554118|ref|NP_499847.1| MeDiaTor family member (mdt-29) [Caenorhabditis elegans] [NCBI NR]
  • Mediator of RNA polymerase II transcription subunit 29 OS=Caenorhabditis elegans GN=mdt-29 PE=1 SV=1 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE18874 WBGene00007025 locus:mdt-29 status:Partially_confirmed TR:Q9XUS2 protein_id:CAB04600.1 [wormpep150.fasta]
  • 18874 WBGene00007025 locus:mdt-29 status:Partially_confirmed TR:Q9XUS2 protein_id:CAB04600.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • putative protein (48.3 kD) (3O867) [Caenorhabditis elegans]gi|3878446|emb|CAB04600.1| Hypothetical protein K08E3.8 [Caenorhabditis elegans]gi|7505544|pir||T23461 hypothetical protein K08E3.8 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • status:Partially_confirmed TR:Q9XUS2 protein_id:CAB04600.1 [wormpep115.fasta.reversed]
  • CE18874 status:Partially_confirmed TR:Q9XUS2 protein_id:CAB04600.1 [wormpep80.hongbin]
  • CE18874 WBGene00007025 locus:mdt-29 status:Confirmed UniProt:Q9XUS2 protein_id:CAB04600.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE18874 WBGene00007025 locus:mdt-29 status:Confirmed UniProt:Q9XUS2 protein_id:CAB04600.1| [wormORF-contam.fasta]
  • MeDiaTor family member (mdt-29) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein K08E3.8 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE18874 WBGene00007025 locus:mdt-29 status:Confirmed TR:Q9XUS2 protein_id:CAB04600.1 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE18874 WBGene00007025 locus:mdt-29 status:Confirmed UniProt:Q9XUS2 protein_id:CAB04600.1 Mediator of RNA polymerase II transcription subunit 29 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 441 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISSLink to PubMed article]
    Biological Process: regulation of cell fate specification [IGILink to PubMed article]
    lateral inhibition [IGILink to PubMed article]
    positive regulation of Notch signaling pathway [IGILink to PubMed article]
    Molecular Function: protein binding [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGQGPPPSM TPQQQHMLMQ QQQQQQMMRQ QQMQQQQMQQ QRQQQIQQQA QQPYQRARTP  60
   61 QMVPQGGSPG GAHLQMHPHL QPQGQMQPRS PLVGAQLQAP SSVPTAANPT TPQMMQQQMG 120
  121 MNQPMSLPPT HVSRPGSVAP PSSVPVNLQH TSGAPGLPGS QMEHQYPMHL QPQQQTLSRP 180
  181 GSQQSQHIQQ PGSIQRPGSV LAPGSIPPGG PASQTGPQSI QVFGPGSVQP PGSTQAPSSV 240
  241 QPASTFNPGS IQAPASQQPP ASVQPPPSAA SGSTVAGAQS SKEPLKPNEE QIRMVQDPVD 300
  301 LVRNLVQKDL RNSLVEMNKR GAELVRQKQE GEVNEDGKAQ YSRATNDFHA VCDEIDRTLT 360
  361 TVLETAKQLS KLDKVFFDRS SRDLDGEVMV NSVQNFVDNT EIVQRMFDDT IGSVTSSMES 420
  421 MRRRQKKWED QHKNDDVEMM E

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..84] deduced N/A No confident structure predictions are available.
    2 View Details [85..320] PSI-BLAST 6.045757 Sec24
    3 View Details [321..441] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle